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[181883_at]

Description B0454.7 /REP_DB=WormBase Gene ID /WP=CE07757 /TR=O17166 /GB=AAB70944.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 47      6grp_cgc > 42      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 151.6
(3)
P 		46.3
(-2.1)
A 		26.5
(-3)
A 		51.2
(-1.8)
A 		125
B 144.8
(3)
P 		37.3
(-2.1)
A 		32
(-2.3)
A 		17.1
(-3)
A 		128
C 148.2
(3)
P 		45.4
(-1.3)
A 		36
(-1.7)
A 		5.2
(-3)
A 		143
avr 148.2
(3) 		43
(-2.1) 		31.5
(-2.7) 		24.5
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 7.9
(-0.8)
A 		4.1
(-2.3)
A 		2.3
(-3)
A 		6
(-1.6)
A 		17.9
(3)
A 		5.5
(-1.8)
A 		16
B 11
(-0.9)
A 		28.4
(3)
A 		1.9
(-3)
A 		9.9
(-1.2)
A 		2
(-3)
A 		2.8
(-2.8)
A 		27
C 24.1
(2.1)
A 		18.6
(0.8)
A 		28.1
(3)
A 		2.1
(-3)
A 		25.4
(2.4)
A 		3.9
(-2.6)
A 		26
avr 14.3
(1.7) 		17
(3) 		10.8
(0.1) 		6
(-2.1) 		15.1
(2.1) 		4.1
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 55.2
(3)
P 		10.1
(-2.6)
A 		6.9
(-3)
A 		7.5
(-2.9)
A 		48
B 46.2
(3)
P 		9.2
(-2.2)
A 		7.4
(-2.5)
A 		3.6
(-3)
A 		43
C 49.1
(3)
P 		13.1
(-1.5)
A 		12.6
(-1.5)
A 		0.9
(-3)
A 		48
avr 50.2
(3) 		10.8
(-2.1) 		9
(-2.4) 		4
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.4
(-1.9)
A 		1.4
(-1.9)
A 		0.5
(-3)
A 		1.5
(-1.8)
A 		5.4
(3)
A 		1.3
(-2)
A 		5
B 3.8
(-0.8)
A 		9.5
(3)
A 		0.5
(-3)
A 		2.6
(-1.6)
A 		0.8
(-2.8)
A 		1.1
(-2.6)
A 		9
C 8.9
(3)
A 		5.7
(0.7)
A 		7.1
(1.7)
A 		0.4
(-3)
A 		8.2
(2.5)
A 		1.3
(-2.4)
A 		9
avr 4.7
(1.9) 		5.5
(3) 		2.7
(-0.9) 		1.5
(-2.6) 		4.8
(2) 		1.2
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181883_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4511
Sequence Type Exemplar sequence
Representative Public ID B0454.7 NCBI
Target Description B0454.7 /REP_DB=WormBase Gene ID /WP=CE07757 /TR=O17166 /GB=AAB70944.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062026(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062026 NCBI Caenorhabditis elegans C-type LECtin family member (clec-2) (clec-2) mRNA, complete cds. 11/11 A 
SNAP00000034446 ENSEMBL cdna:SNAP chromosome:CEL140:II:3017783:3023426:-1 11/11 None
GENEFINDER00000034461 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3020580:3023426:-1 11/11 None
B0454.7 ENSEMBL cdna:known chromosome:CEL140:II:3020580:3023426:-1 gene:B0454.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3020578-3023425(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-2
Ensembl B0454.7
Entrez Gene 181993 Entrez gene
SwissProt O17166 EMBL-EBI
WormBase CE07757 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB70944 C-type lectin protein 2 [Caenorhabditis elegans] ref|NP_494427.1| C-type LECtin family member (clec-2) [Caenorhabditis elegans] 0.0
blast AAB70938 C-type lectin protein 3 [Caenorhabditis elegans] ref|NP_494426.2| C-type LECtin family member (clec-3) [Caenorhabditis elegans] 0.0
blast CAB54396 Hypothetical protein Y38E10A.5 [Caenorhabditis elegans] ref|NP_496688.1| C-type LECtin family member (clec-4) [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 3.0E-8
Pfam IPR001304 EMBL-EBI C-type lectin 8.2E-9
Pfam IPR000859 EMBL-EBI CUB 8.6E-22
Pfam IPR001304 EMBL-EBI C-type lectin 4.0E-8
Pfam IPR001304 EMBL-EBI C-type lectin 3.9E-6
Pfam IPR000859 EMBL-EBI CUB 3.0E-19
Pfam IPR000859 EMBL-EBI CUB 3.2E-5
Sequence
Target Sequence 
>C. ELEGANS:181883_AT
gccataccacacaagcaaacgttcttattggaggcatgtggccaatggatcacgtgaaca
cttgggtggatgggacaatgtgggactacagtaatatcgactcgggatacgatccaacga
accactgcattgctatggcaaacaatgcgacatcggaatacaacttgggacaatggtttg
gtgttgactgcaaagattattacagttttgtctgtaagcggcctgccggggtaccatgct
ctacagaccagccgaaggtcacagtgacacctgtcccatcaaatgagtcattctgtaact
ctactgttctgatgacccccggaattataacttcaccaaattacccacaaaactatgaca
ataacgtgtactgcagctacaagctctccaccttgggatcctataatatcctcctcgagt
tcacatccttctcaacagaggagaatgtcgacttggtcacggtttacgacggcgagtcaa
cgaatggcttgaagattggaacctacagcggatctcgcgagccattccatttgatttcaa
aaggaaataactttttcctcgcattttcaacagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCATACCACACAAGCAAACGTTCT 86 279 620 Antisense
GGCATGTGGCCAATGGATCACGTGA 144 537 652 Antisense
ATCGACTCGGGATACGATCCAACGA 238 35 715 Antisense
ATCCAACGAACCACTGCATTGCTAT 384 41 731 Antisense
GTCATTCTGTAACTCTACTGTTCTG 439 467 906 Antisense
ATAATATCCTCCTCGAGTTCACATC 585 25 1022 Antisense
GAGAATGTCGACTTGGTCACGGTTT 533 389 1060 Antisense
GTCACGGTTTACGACGGCGAGTCAA 110 461 1075 Antisense
TGGAACCTACAGCGGATCTCGCGAG 695 545 1116 Antisense
TCGCGAGCCATTCCATTTGATTTCA 357 599 1134 Antisense
CTTTTTCCTCGCATTTTCAACAGAT 89 223 1170 Antisense
Sequence Source Affymetrix Proprietary Database