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[181882_at]

Description T07F8.1 /REP_DB=WormBase Gene ID /WP=CE01389 /TR=P91440 /GB=AAB38096.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 15      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 40.4
(3)
A 		14.8
(-2.2)
A 		11.1
(-3)
A 		27.2
(0.3)
A 		29
B 10.9
(-2.7)
A 		10.8
(-2.7)
A 		8.6
(-3)
A 		58.3
(3)
A 		50
C 38.2
(3)
A 		11.8
(-2.7)
A 		19.4
(-1)
A 		10.3
(-3)
A 		28
avr 29.8
(2.4) 		12.5
(-3) 		13
(-2.8) 		31.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 91.6
(3)
A 		45.9
(-0.3)
A 		7.9
(-3)
A 		26.1
(-1.7)
A 		22.3
(-2)
A 		51.6
(0.1)
A 		84
B 13.9
(-3)
A 		32.7
(0.3)
A 		24.9
(-1.1)
A 		48.3
(3)
A 		28
(-0.5)
A 		38.9
(1.4)
A 		34
C 33.2
(0.6)
A 		6.7
(-2.9)
A 		51.4
(3)
A 		14.3
(-1.9)
A 		34.2
(0.7)
A 		5.7
(-3)
A 		46
avr 46.2
(3) 		28.4
(-2.9) 		28.1
(-3) 		29.6
(-2.5) 		28.2
(-3) 		32.1
(-1.7) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 14.7
(3)
A 		3.2
(-2.8)
A 		2.9
(-3)
A 		4
(-2.4)
A 		12
B 3.5
(-2.1)
A 		2.7
(-2.6)
A 		2
(-3)
A 		12.4
(3)
A 		10
C 12.6
(3)
A 		3.4
(-2.1)
A 		6.8
(-0.2)
A 		1.7
(-3)
A 		11
avr 10.3
(3) 		3.1
(-3) 		3.9
(-2.3) 		6
(-0.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 16.9
(3)
A 		16.3
(2.8)
A 		1.7
(-3)
A 		6.6
(-1.1)
A 		6.7
(-1)
A 		12.6
(1.3)
A 		15
B 4.8
(-3)
A 		10.9
(0.8)
A 		6
(-2.3)
A 		12.8
(1.9)
A 		11.4
(1.1)
A 		14.5
(3)
A 		10
C 12.3
(2.6)
A 		2
(-2.9)
A 		13.1
(3)
A 		2.9
(-2.5)
A 		11.1
(1.9)
A 		1.9
(-3)
A 		11
avr 11.3
(3) 		9.7
(0.8) 		6.9
(-3) 		7.4
(-2.3) 		9.7
(0.8) 		9.7
(0.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181882_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5120
Sequence Type Exemplar sequence
Representative Public ID T07F8.1 NCBI
Target Description T07F8.1 /REP_DB=WormBase Gene ID /WP=CE01389 /TR=P91440 /GB=AAB38096.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063081 NCBI Caenorhabditis elegans T07F8.1 (T07F8.1) mRNA, complete cds. 11/11 None
T07F8.1 ENSEMBL cdna:known chromosome:CEL140:II:7149179:7151691:1 gene:T07F8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006108 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7149174-7151687(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07F8.1
Entrez Gene 188234 Entrez gene
SwissProt P91440 EMBL-EBI
WormBase CE01389 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB38096 Hypothetical protein T07F8.1 [Caenorhabditis elegans] ref|NP_495482.1| T07F8.1 [Caenorhabditis elegans] 0.0
blast AAB94234 Hypothetical protein F16B4.3 [Caenorhabditis elegans] ref|NP_503452.2| F16B4.3 [Caenorhabditis elegans] 4.0E-74
blast CAE56184 Hypothetical protein CBG23806 [Caenorhabditis briggsae] 6.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR009689 EMBL-EBI Protein of unknown function DUF1280 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181882_AT
gatgagcttgccaggcgcttacaacacgagacaagccatcttagtaacttgaaagctgct
cgccaagacatgacaacggctatttcgactcgaactgggccaacaaaacagaaactcgag
gaagttttggattatattggctgtagtcaaaaaattaactatcagggattaaccggaaat
caagttcgccaactactaaggacagaaaacattgacaaagtactaaaagtcttcacggac
tgtagttggatccagaatatgagaaacttcatgaatgatttggcgtcactcatgtcagca
agcaataacgcagtcttcacagatgatgatttgaatgatttcgctaaaactttgaagaac
ttgaagagaaacatcagaattcttcatccttcgatgggagtcactcctaaacttcacatc
ctctgtactcacctcgagccttacattagagcaaaaagaacttggggtcgtacttcagaa
caagggatggaagcgtttcatgtgctcttcaggacaacagagacgcgattttcttctgtg
atgtctctcaagctacgcgctgagttgatgatcgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGCTTGCCAGGCGCTTACAAC 216 411 1864 Antisense
GAAAGCTGCTCGCCAAGACATGACA 367 357 1914 Antisense
TGACAACGGCTATTTCGACTCGAAC 403 571 1934 Antisense
GCGTCACTCATGTCAGCAAGCAATA 689 291 2146 Antisense
ACATCAGAATTCTTCATCCTTCGAT 59 107 2234 Antisense
GGAGTCACTCCTAAACTTCACATCC 462 517 2260 Antisense
TACTCACCTCGAGCCTTACATTAGA 615 645 2289 Antisense
GAACTTGGGGTCGTACTTCAGAACA 696 347 2321 Antisense
GGAAGCGTTTCATGTGCTCTTCAGG 458 529 2352 Antisense
ACGCGATTTTCTTCTGTGATGTCTC 300 91 2386 Antisense
GCTACGCGCTGAGTTGATGATCGAC 289 303 2415 Antisense
Sequence Source Affymetrix Proprietary Database