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[181881_at]

Description F58A6.2 /REP_DB=WormBase Gene ID /WP=CE04676 /TR=Q20957 /GB=AAA96197.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 419.4
(3)
P 		82.3
(-3)
A 		105.9
(-2.6)
A 		244.1
(-0.1)
A 		337
B 347.3
(3)
P 		145.3
(-2.5)
A 		128.7
(-3)
A 		250.7
(0.3)
P 		219
C 391.3
(3)
P 		188.3
(-1.9)
A 		140.2
(-3)
P 		282.4
(0.4)
P 		251
avr 386
(3) 		138.6
(-2.7) 		124.9
(-3) 		259.1
(0.1) 		261

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 185.7
(2.4)
M 		195
(3)
P 		185.9
(2.4)
M 		98.3
(-3)
A 		156
(0.6)
A 		143.2
(-0.2)
A 		97
B 250.2
(0.4)
A 		259.8
(0.9)
P 		297.6
(2.9)
A 		267.4
(1.3)
A 		299.9
(3)
A 		185.2
(-3)
A 		115
C 250.1
(2.1)
P 		277.1
(3)
M 		127.1
(-1.8)
A 		109.5
(-2.4)
A 		127.1
(-1.8)
A 		91.4
(-3)
A 		186
avr 228.7
(2.1) 		244
(3) 		203.5
(0.7) 		158.4
(-1.9) 		194.3
(0.1) 		139.9
(-3) 		104
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 152.7
(3)
P 		17.9
(-3)
A 		27.7
(-2.6)
A 		35.7
(-2.2)
A 		135
B 110.7
(3)
P 		35.9
(-2.5)
A 		29.8
(-3)
A 		53.4
(-1.2)
P 		81
C 129.5
(3)
P 		54.2
(-2.5)
A 		48.9
(-2.9)
P 		47.6
(-3)
P 		82
avr 131
(3) 		36
(-3) 		35.5
(-3) 		45.6
(-2.4) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 34.2
(-1.7)
M 		69.4
(3)
P 		40.5
(-0.9)
M 		24.9
(-3)
A 		47.1
(-0)
A 		34.9
(-1.7)
A 		45
B 87
(-1)
A 		86.5
(-1)
P 		72.3
(-2.6)
A 		70.8
(-2.8)
A 		121.8
(3)
A 		69
(-3)
A 		53
C 92.7
(3)
P 		84.6
(2.3)
M 		32.3
(-2.1)
A 		22
(-3)
A 		41.1
(-1.4)
A 		30.6
(-2.3)
A 		71
avr 71.3
(1.7) 		80.2
(3) 		48.4
(-1.7) 		39.2
(-3) 		70
(1.5) 		44.8
(-2.2) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181881_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4689
Sequence Type Exemplar sequence
Representative Public ID F58A6.2 NCBI
Target Description F58A6.2 /REP_DB=WormBase Gene ID /WP=CE04676 /TR=Q20957 /GB=AAA96197.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062551 NCBI Caenorhabditis elegans F58A6.2 (F58A6.2) mRNA, complete cds. 11/11 None
SNAP00000019944 ENSEMBL cdna:SNAP chromosome:CEL140:II:5136855:5138398:1 9/11 None
GENEFINDER00000019953 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5136855:5138136:1 9/11 None
F58A6.2 ENSEMBL cdna:known chromosome:CEL140:II:5136855:5137882:1 gene:F58A6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5136852-5137880(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58A6.2
Entrez Gene 186487 Entrez gene
SwissProt Q20957 EMBL-EBI
WormBase CE04676 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE59049 Hypothetical protein CBG02332 [Caenorhabditis briggsae] 1.0E-102
blast AAA96197 Hypothetical protein F58A6.2 [Caenorhabditis elegans] ref|NP_494952.1| F58A6.2 [Caenorhabditis elegans] 4.0E-90
blast CAE59049 Hypothetical protein CBG02332 [Caenorhabditis briggsae] 5.0E-86
blast AAA96197 Hypothetical protein F58A6.2 [Caenorhabditis elegans] ref|NP_494952.1| F58A6.2 [Caenorhabditis elegans] 3.0E-75
blast AAA96197 Hypothetical protein F58A6.2 [Caenorhabditis elegans] ref|NP_494952.1| F58A6.2 [Caenorhabditis elegans] 4.0E-75
blast CAE59049 Hypothetical protein CBG02332 [Caenorhabditis briggsae] 6.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494952.1 3 20-42,63-85,105-125
F58A6.2 3 20-42,63-85,105-125
SNAP00000019944 4 21-43,58-80,93-115,130-150
GENEFINDER00000019953 4 21-43,58-80,93-115,130-150
Sequence
Target Sequence 
>C. ELEGANS:181881_AT
ttcagatcggtttcgtgtgttcggaggaattcatattaaatatgtcgcctcgatttgtgc
agtttttggagtttttgcaacgataggtgttttcttatttggtttatggatatttccatg
gcatttatacgaagattcagttaatacaacaggtaagcttcaaactcagtggttaatgcc
tgctttcgcatatcatttgtttatcgctgtgctcaacgccatcaccagcctaattgccgt
gggggagttgttttcggagggtaatatctcacatcgagacgctgctatggcgaagattgt
gctcgttgtttgtccaacaattttcatgattcaaatgattggattctatgttgtcattaa
gtgtaggacgtacattcaatgcaagagaagacatgttagaaatggagaaccaccggtaag
attttcacaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGATCGGTTTCGTGTGTTCGGA 70 689 30 Antisense
ATATGTCGCCTCGATTTGTGCAGTT 267 21 69 Antisense
ACAGGTAAGCTTCAAACTCAGTGGT 485 105 178 Antisense
CTCAGTGGTTAATGCCTGCTTTCGC 680 227 194 Antisense
CCTGCTTTCGCATATCATTTGTTTA 232 267 208 Antisense
ATTTGTTTATCGCTGTGCTCAACGC 131 19 224 Antisense
TCACCAGCCTAATTGCCGTGGGGGA 85 623 251 Antisense
TTCGGAGGGTAATATCTCACATCGA 530 695 282 Antisense
CTCACATCGAGACGCTGCTATGGCG 451 227 297 Antisense
GAAGATTGTGCTCGTTGTTTGTCCA 602 337 321 Antisense
AACCACCGGTAAGATTTTCACAATG 519 137 437 Antisense
Sequence Source Affymetrix Proprietary Database