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[181880_at]

Description Y59A8A.2 /REP_DB=WormBase Gene ID /WP=CE26433 /TR=Q9GRZ5 /GB=CAC14404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 23      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 237
(-0.1)
A 		240.1
(0.1)
A 		197.1
(-3)
A 		281
(3)
A 		84
B 212.8
(2.1)
A 		195.8
(-3)
A 		198.2
(-2.3)
A 		215.9
(3)
A 		20
C 331
(3)
A 		219.4
(-3)
A 		235.4
(-2.1)
A 		251.8
(-1.3)
A 		112
avr 260.3
(3) 		218.4
(-2) 		210.2
(-3) 		249.6
(1.7) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 191.9
(-3)
A 		193.5
(-2.9)
A 		276.9
(-0.3)
A 		299.8
(0.4)
A 		290.2
(0.1)
P 		382.9
(3)
P 		191
B 269.2
(-1.1)
M 		210.8
(-3)
A 		228.7
(-2.4)
A 		251.9
(-1.7)
A 		353.5
(1.6)
P 		396.4
(3)
P 		186
C 195.5
(-2.2)
A 		247.4
(-1.1)
A 		157.3
(-3)
A 		226.1
(-1.5)
A 		369.7
(1.6)
P 		435.7
(3)
P 		278
avr 218.9
(-2.9) 		217.2
(-3) 		221
(-2.9) 		259.3
(-1.7) 		337.8
(0.9) 		405
(3) 		188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 86.3
(3)
A 		52.1
(-1.5)
A 		51.5
(-1.6)
A 		41.1
(-3)
A 		45
B 67.9
(3)
A 		48.4
(-2.3)
A 		45.9
(-3)
A 		46
(-3)
A 		22
C 109.6
(3)
A 		63.1
(-1.2)
A 		82
(0.5)
A 		42.5
(-3)
A 		67
avr 87.9
(3) 		54.5
(-1.5) 		59.8
(-0.8) 		43.2
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 35.4
(-3)
A 		68.8
(0.5)
A 		60.3
(-0.4)
A 		76
(1.2)
A 		87.6
(2.4)
P 		93.2
(3)
P 		58
B 93.7
(-0.5)
M 		70.2
(-2)
A 		55.5
(-3)
A 		66.7
(-2.3)
A 		143.6
(2.7)
P 		147.8
(3)
P 		92
C 72.5
(-1.2)
A 		75.5
(-1)
A 		40
(-3)
A 		45.5
(-2.7)
A 		119.6
(1.5)
P 		145.9
(3)
P 		106
avr 67.2
(-1.8) 		71.5
(-1.5) 		51.9
(-3) 		62.7
(-2.2) 		116.9
(2.1) 		129
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181880_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12599
Sequence Type Exemplar sequence
Representative Public ID Y59A8A.2 NCBI
Target Description Y59A8A.2 /REP_DB=WormBase Gene ID /WP=CE26433 /TR=Q9GRZ5 /GB=CAC14404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075107 NCBI Caenorhabditis elegans Y59A8A.2 (Y59A8A.2) mRNA, complete cds. 11/11 None
SNAP00000001054 ENSEMBL cdna:SNAP chromosome:CEL140:V:17848717:17882387:1 10/11 None
GENEFINDER00000001058 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17873990:17882400:1 9/11 None
Y59A8A.2 ENSEMBL cdna:known chromosome:CEL140:V:17873981:17882481:1 gene:Y59A8A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17873989-17882387(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59A8A.2
Entrez Gene 180169 Entrez gene
SwissProt Q9GRZ5 EMBL-EBI
WormBase CE26433 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640456_AT dm
DROSGENOME1:153939_AT dm
CHICKEN:GGA.16287.1.S1_AT PHD finger protein 14 gga
CHICKEN:GGAAFFX.13224.1.S1_S_AT PHD finger protein 14 gga
HG-U133A_2:204525_AT PHD finger protein 14 hs
HG-U133A:204525_AT PHD finger protein 14 hs
HG-U133_PLUS_2:204525_AT PHD finger protein 14 hs
HU35KSUBC:RC_AA608749_AT PHD finger protein 14 hs
HU35KSUBC:RC_AA253408_AT PHD finger protein 14 hs
U133_X3P:G7662303_3P_AT PHD finger protein 14 hs
U133_X3P:HS.156276.1.S1_3P_AT PHD finger protein 14 hs
HG-U133_PLUS_2:228095_AT PHD finger protein 14 hs
HG-U133B:228095_AT PHD finger protein 14 hs
HG-U95AV2:38195_AT PHD finger protein 14 hs
HG-U95C:60470_AT PHD finger protein 14 hs
HG-U95D:85531_AT PHD finger protein 14 hs
HG-U133_PLUS_2:216104_AT PHD finger protein 14 hs
HG-U133A_2:216104_AT PHD finger protein 14 hs
HG-U133A:216104_AT PHD finger protein 14 hs
U133_X3P:HS.236760.0.S1_3P_AT PHD finger protein 14 hs
HG-U133_PLUS_2:216097_AT PHD finger protein 14 hs
HG-U133A_2:216097_AT PHD finger protein 14 hs
HG-U133A:216097_AT PHD finger protein 14 hs
HG-U95D:70625_AT PHD finger protein 14 hs
HG-U95D:83829_AT PHD finger protein 14 hs
HU35KSUBC:RC_N40202_AT PHD finger protein 14 hs
HU35KSUBD:RC_AA600172_AT PHD finger protein 14 hs
MOUSE430_2:1453270_A_AT PHD finger protein 14 mm
MOE430B:1453270_A_AT PHD finger protein 14 mm
MOUSE430_2:1453271_AT PHD finger protein 14 mm
MOE430B:1453271_AT PHD finger protein 14 mm
MG-U74BV2:114112_AT PHD finger protein 14 mm
MG-U74BV2:163143_AT PHD finger protein 14 mm
MOE430B:1453743_X_AT PHD finger protein 14 mm
MOUSE430_2:1453743_X_AT PHD finger protein 14 mm
MU19KSUBC:TC38380_AT PHD finger protein 14 mm
MG-U74CV2:135765_AT PHD finger protein 14 (Phf14), mRNA mm
MOE430B:1440247_AT PHD finger protein 14 (Phf14), mRNA mm
MOUSE430_2:1440247_AT PHD finger protein 14 (Phf14), mRNA mm
MG-U74BV2:112104_AT PHD finger protein 14 (Phf14), mRNA mm
MOE430B:1446642_AT PHD finger protein 14 (Phf14), mRNA mm
MOUSE430_2:1446642_AT PHD finger protein 14 (Phf14), mRNA mm
MOE430B:1457510_AT PHD finger protein 14 (Phf14), mRNA mm
MOUSE430_2:1457510_AT PHD finger protein 14 (Phf14), mRNA mm
RG-U34B:RC_AI060217_AT similar to PHD finger protein 14 isoform 1 rn
RG-U34B:RC_AA998053_S_AT similar to PHD finger protein 14 isoform 1 rn
RAE230B:1392452_AT similar to PHD finger protein 14 isoform 1 rn
RAT230_2:1392452_AT similar to PHD finger protein 14 isoform 1 rn
RAE230B:1393458_S_AT similar to PHD finger protein 14 isoform 1 rn
RAT230_2:1393458_S_AT similar to PHD finger protein 14 isoform 1 rn
RAE230B:1384518_AT similar to PHD finger protein 14 isoform 1 rn
RAT230_2:1384518_AT similar to PHD finger protein 14 isoform 1 rn
RAE230B:1384766_A_AT similar to PHD finger protein 14 isoform 1 rn
RAT230_2:1384766_A_AT similar to PHD finger protein 14 isoform 1 rn
RAE230B:1393552_X_AT Similar to PHD finger protein 14 isoform 1 rn
RAT230_2:1393552_X_AT Similar to PHD finger protein 14 isoform 1 rn
RAE230B:1378799_AT Similar to PHD finger protein 14 isoform 1 rn
RAT230_2:1378799_AT Similar to PHD finger protein 14 isoform 1 rn
RAE230B:1392000_AT Similar to PHD finger protein 14 isoform 1 rn
RAT230_2:1392000_AT Similar to PHD finger protein 14 isoform 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14404 Hypothetical protein Y59A8A.2 [Caenorhabditis elegans] ref|NP_507508.1| Y59A8A.2 [Caenorhabditis elegans] 0.0
blast CAE61707 Hypothetical protein CBG05656 [Caenorhabditis briggsae] 0.0
blast CAE61707 Hypothetical protein CBG05656 [Caenorhabditis briggsae] 1.0E-174
blast CAE61707 Hypothetical protein CBG05656 [Caenorhabditis briggsae] 1.0E-147
blast XP_683122 PREDICTED: similar to PHD finger protein 14 isoform 1 [Danio rerio] 5.0E-48
blast XP_683122 PREDICTED: similar to PHD finger protein 14 isoform 1 [Danio rerio] 7.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 5.2E-6
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 9.4E-13
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 5.2E-6
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 9.4E-13
Sequence
Target Sequence 
>C. ELEGANS:181880_AT
tcgagtttcatgcaaatccgcgactcacaaataatcccagaagaagaggaaaaactccga
aaatcacgtgaactgctagccgaaaccaaggcaaatcaggagaaaaagtcgtctcaaaag
catcttgtcgaacgattttcggccaacgaggagctcattgagcagaagctcacctcaatc
gaaaagcttcatcaattgctcacagagctcggcggtgactcgggtcttcttctcagcgat
ttcaataatcgacagagttgctcgcggagctcaccggctataattgcaccgaaaaagatg
aattacacgtgtgttgtgtgccgaaagagtacggagcaacataaacagacacaatgtgat
gagtgtcataaaagttatcatattggatgtctgagccctccgttgactcggctaccgaaa
cg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGTTTCATGCAAATCCGCGACT 22 603 1288 Antisense
ATCCGCGACTCACAAATAATCCCAG 130 39 1303 Antisense
ATCACGTGAACTGCTAGCCGAAACC 133 27 1350 Antisense
GAACGATTTTCGGCCAACGAGGAGC 643 347 1417 Antisense
GCAGAAGCTCACCTCAATCGAAAAG 558 313 1449 Antisense
AATTGCTCACAGAGCTCGGCGGTGA 455 177 1481 Antisense
GTCTTCTTCTCAGCGATTTCAATAA 585 467 1511 Antisense
AATCGACAGAGTTGCTCGCGGAGCT 624 167 1534 Antisense
GGAGCTCACCGGCTATAATTGCACC 476 521 1553 Antisense
TCATATTGGATGTCTGAGCCCTCCG 416 615 1665 Antisense
CTCCGTTGACTCGGCTACCGAAACG 635 233 1685 Antisense
Sequence Source Affymetrix Proprietary Database