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[181879_at]

Description D1069.4 /REP_DB=WormBase Gene ID /WP=CE17616 /TR=O44791 /GB=AAB94944.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 38      4grp_high_8_8 > 18      6grp_total > 27      4grp_total > 22      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 150.8
(2.3)
P 		74.4
(-3)
P 		98.6
(-1.3)
A 		161.2
(3)
P 		87
B 194.1
(3)
P 		86.9
(-1.3)
A 		44.3
(-3)
P 		150.9
(1.3)
P 		150
C 154.9
(3)
P 		126.3
(1)
P 		67.8
(-3)
P 		153.8
(2.9)
P 		87
avr 166.6
(3) 		95.9
(-1.4) 		70.2
(-3) 		155.3
(2.3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 139.6
(1.8)
P 		150.3
(2.9)
P 		103
(-2.1)
P 		94.6
(-3)
P 		128.4
(0.6)
P 		151
(3)
P 		56
B 234.6
(3)
P 		128.3
(-1.3)
P 		113.6
(-1.9)
P 		91.9
(-2.8)
P 		87.6
(-3)
P 		145.2
(-0.6)
P 		147
C 179
(3)
P 		114
(-0.9)
P 		78.3
(-3)
P 		171.5
(2.6)
A 		97.6
(-1.9)
P 		106.2
(-1.3)
P 		101
avr 184.4
(3) 		130.9
(-0.7) 		98.3
(-3) 		119.3
(-1.5) 		104.5
(-2.6) 		134.1
(-0.5) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 54.9
(3)
P 		16.1
(-3)
P 		25.8
(-1.5)
A 		23.6
(-1.8)
P 		39
B 61.9
(3)
P 		21.5
(-1.7)
A 		10.3
(-3)
P 		32.2
(-0.5)
P 		52
C 51.3
(3)
P 		36.3
(-0.2)
P 		23.6
(-3)
P 		25.9
(-2.5)
P 		28
avr 56
(3) 		24.6
(-2.2) 		19.9
(-3) 		27.2
(-1.8) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 25.7
(-2.4)
P 		53.5
(3)
P 		22.4
(-3)
P 		24
(-2.7)
P 		38.8
(0.2)
P 		36.8
(-0.2)
P 		31
B 81.6
(3)
P 		42.7
(-1.1)
P 		27.6
(-2.7)
P 		24.3
(-3)
P 		35.6
(-1.8)
P 		54.2
(0.1)
P 		57
C 66.3
(3)
P 		34.8
(-1.1)
P 		19.9
(-3)
P 		34.5
(-1.1)
A 		31.6
(-1.5)
P 		35.5
(-1)
P 		46
avr 57.9
(3) 		43.7
(0.5) 		23.3
(-3) 		27.6
(-2.3) 		35.3
(-0.9) 		42.2
(0.3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5009
Sequence Type Exemplar sequence
Representative Public ID D1069.4 NCBI
Target Description D1069.4 /REP_DB=WormBase Gene ID /WP=CE17616 /TR=O44791 /GB=AAB94944.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061315(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061315 NCBI Caenorhabditis elegans D1069.4 (D1069.4) mRNA, complete cds. 11/11 None
GENEFINDER00000035338 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:348248:350591:-1 10/11 None
D1069.4 ENSEMBL cdna:known chromosome:CEL140:II:348265:350586:-1 gene:D1069.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:348264-350586(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1069.4
Entrez Gene 183924 Entrez gene
SwissProt O44791 EMBL-EBI
WormBase CE17616 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493716 D1069.4 [Caenorhabditis elegans] gb|AAB94944.1| Hypothetical protein D1069.4 [Caenorhabditis elegans] 0.0
blast CAE62783 Hypothetical protein CBG06954 [Caenorhabditis briggsae] 0.0
blast NP_493716 D1069.4 [Caenorhabditis elegans] gb|AAB94944.1| Hypothetical protein D1069.4 [Caenorhabditis elegans] 1.0E-176
blast CAE62783 Hypothetical protein CBG06954 [Caenorhabditis briggsae] 1.0E-173
blast CAA19526 Hypothetical protein Y48A6B.1 [Caenorhabditis elegans] ref|NP_499413.1| Y48A6B.1 [Caenorhabditis elegans] 2.0E-72
blast CAA19526 Hypothetical protein Y48A6B.1 [Caenorhabditis elegans] ref|NP_499413.1| Y48A6B.1 [Caenorhabditis elegans] 9.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493716.1 7 32-54,67-89,111-133,154-176,223-245,277-299,319-341
D1069.4 7 32-54,67-89,111-133,154-176,223-245,277-299,319-341
GENEFINDER00000035338 6 34-56,69-91,113-135,156-178,225-247,279-301
Sequence
Target Sequence 
>C. ELEGANS:181879_AT
gagtccggaaatcgagacctcaaccgtttccgaagttttgaggctttccggtcagagtat
accaaaagaagttcgatatagtttgaatttttctacgtattcgtgcgcgtttttcaagtt
taacttgtggatgttggcgattgtgttgaaggcaatcccctgcgcacttctcctctggtt
taccattgctctggtggtaaaactccgtcaaacagatgagaaacgaaattatttatactc
gaaaagcttccgaaaacacgtcaagaaaactacagtacccgaccgtaccacctatatgct
catcattatgcttgtggtttttttggtgacagagcttccgcaggggtttttggcacttct
gaatggcctgtacacaggagatgttaatatttatatttataagaatttatccgaattgtt
ggattttctatcgctgattaattgcagcgtggatttcctgctctattgtgtgatgagctc
ccggtaccgtcaaacattcggtcatatgctgatacgtgtcgaatcgtggcttcgcaatca
cggagaacgtcgtcgacttgcgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCCGGAAATCGAGACCTCAACC 168 395 549 Antisense
AGTTTTGAGGCTTTCCGGTCAGAGT 677 59 582 Antisense
GTATTCGTGCGCGTTTTTCAAGTTT 137 453 645 Antisense
TCCTCTGGTTTACCATTGCTCTGGT 418 593 719 Antisense
CGTACCACCTATATGCTCATCATTA 440 243 832 Antisense
TGACAGAGCTTCCGCAGGGGTTTTT 522 571 875 Antisense
GGGGTTTTTGGCACTTCTGAATGGC 406 495 891 Antisense
TGCAGCGTGGATTTCCTGCTCTATT 316 577 991 Antisense
CTATTGTGTGATGAGCTCCCGGTAC 603 179 1011 Antisense
GATACGTGTCGAATCGTGGCTTCGC 152 425 1059 Antisense
ACGGAGAACGTCGTCGACTTGCGCG 464 95 1088 Antisense
Sequence Source Affymetrix Proprietary Database