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[181878_at]

Description ZK1128.1 /REP_DB=WormBase Gene ID /WP=CE24715 /TR=Q09644 /GB=CAA87427.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 73      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 73      6grp_total > 74      4grp_total > 56      6grp_highest_sub > 04      6grp_high1_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 527.8
(3)
P 		447
(-2.1)
P 		490.5
(0.6)
P 		432.8
(-3)
P 		95
B 440.2
(-3)
P 		507.7
(0.4)
P 		560.8
(3)
P 		496.6
(-0.2)
P 		121
C 525.8
(-0.1)
P 		526.2
(-0.1)
P 		628.9
(3)
P 		428.8
(-3)
P 		200
avr 497.9
(-0.5) 		493.6
(-0.7) 		560.1
(3) 		452.7
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 396.1
(-3)
P 		437.4
(-2.3)
P 		514.8
(-0.9)
P 		731
(3)
P 		461.8
(-1.8)
P 		531
(-0.6)
P 		335
B 425.4
(-3)
P 		457.2
(-1.8)
P 		443.8
(-2.3)
P 		583.6
(3)
P 		481.8
(-0.9)
P 		566.8
(2.4)
P 		158
C 378.4
(-3)
P 		433.1
(-1.7)
P 		640.9
(3)
P 		636.8
(2.9)
P 		436.5
(-1.7)
P 		505.7
(-0.1)
P 		263
avr 400
(-3) 		442.6
(-2) 		533.2
(0.2) 		650.5
(3) 		460
(-1.6) 		534.5
(0.2) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 192.2
(3)
P 		97
(-1.4)
P 		128.2
(0)
P 		63.4
(-3)
P 		129
B 140.4
(3)
P 		125.4
(0.4)
P 		129.9
(1.2)
P 		105.8
(-3)
P 		35
C 174
(1.2)
P 		151.3
(0.2)
P 		219.2
(3)
P 		72.3
(-3)
P 		147
avr 168.9
(3) 		124.6
(-0) 		159.1
(2.3) 		80.5
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 73
(-3)
P 		155.5
(1.4)
P 		112.1
(-0.9)
P 		185.4
(3)
P 		139.3
(0.5)
P 		129.3
(0)
P 		112
B 148
(-0.7)
P 		152.2
(-0.4)
P 		107.8
(-3)
P 		154.6
(-0.3)
P 		195.7
(2.1)
P 		211.4
(3)
P 		104
C 140.3
(-1.2)
P 		132.2
(-2.4)
P 		163.1
(2.1)
P 		128.1
(-3)
P 		141.2
(-1.1)
P 		169.3
(3)
P 		41
avr 120.4
(-3) 		146.6
(0.2) 		127.7
(-2.1) 		156
(1.3) 		158.7
(1.6) 		170
(3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181878_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6391
Sequence Type Exemplar sequence
Representative Public ID ZK1128.1 NCBI
Target Description ZK1128.1 /REP_DB=WormBase Gene ID /WP=CE24715 /TR=Q09644 /GB=CAA87427.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066845(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066845 NCBI Caenorhabditis elegans ZK1128.1 (ZK1128.1) mRNA, complete cds. 11/11 None
SNAP00000023585 ENSEMBL cdna:SNAP chromosome:CEL140:III:10113074:10114643:-1 11/11 None
GENEFINDER00000023600 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10113074:10114643:-1 11/11 None
ZK1128.1 ENSEMBL cdna:known chromosome:CEL140:III:10113235:10114643:-1 gene:ZK1128.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10113230-10114639(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1128.1
Entrez Gene 259527 Entrez gene
SwissProt Q09644 EMBL-EBI
WormBase CE24715 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256986_AT expressed protein at
CANINE:1599599_AT similar to CG17726-PA cfa
CANINE_2:CFA.20365.1.S1_S_AT similar to CG17726-PA cfa
CANINE_2:CFA.3119.1.A1_AT similar to CG17726-PA cfa
CANINE_2:CFA.3119.1.A1_S_AT similar to CG17726-PA cfa
DROSOPHILA_2:1639946_AT dm
DROSGENOME1:142473_AT dm
CHICKEN:GGA.1922.2.S1_AT similar to PRO1853 protein isoform 1 gga
HG-U133_PLUS_2:220943_S_AT hypothetical protein PRO1853 hs
HG-U133A:220943_S_AT hypothetical protein PRO1853 hs
HG-U133A_2:220943_S_AT hypothetical protein PRO1853 hs
HG-U133_PLUS_2:223560_S_AT hypothetical protein PRO1853 hs
HG-U133B:223560_S_AT hypothetical protein PRO1853 hs
HU35KSUBC:RC_N30222_AT hypothetical protein PRO1853 hs
U133_X3P:G13528701_3P_S_AT hypothetical protein PRO1853 hs
U133_X3P:HS.52891.2.A1_3P_AT hypothetical protein PRO1853 hs
U133_X3P:230379_3P_X_AT hypothetical protein PRO1853 hs
HG-U133_PLUS_2:230379_X_AT hypothetical protein PRO1853 hs
HG-U133B:230379_X_AT hypothetical protein PRO1853 hs
HG-U95B:51806_I_AT hypothetical protein PRO1853 hs
MU11KSUBA:AA666971_F_AT RIKEN cDNA 2410091C18 gene mm
MOE430A:1427904_S_AT RIKEN cDNA 2410091C18 gene mm
MOUSE430A_2:1427904_S_AT RIKEN cDNA 2410091C18 gene mm
MOUSE430_2:1427904_S_AT RIKEN cDNA 2410091C18 gene mm
MU19KSUBA:TC22060_AT RIKEN cDNA 2410091C18 gene (2410091C18Rik), transcript variant 2, mRNA mm
MU19KSUBB:TC33894_AT RIKEN cDNA 2410091C18 gene (2410091C18Rik), transcript variant 2, mRNA mm
RG-U34C:RC_AI170882_AT similar to PRO1853 homolog (predicted) rn
RAE230A:1374082_AT similar to PRO1853 homolog (predicted) rn
RAT230_2:1374082_AT similar to PRO1853 homolog (predicted) rn
RAE230B:1393274_AT similar to PRO1853 homolog (predicted) rn
RAT230_2:1393274_AT similar to PRO1853 homolog (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA87427 Hypothetical protein ZK1128.1 [Caenorhabditis elegans] ref|NP_499246.1| ZK1128.1 [Caenorhabditis elegans] 0.0
blast CAE65039 Hypothetical protein CBG09880 [Caenorhabditis briggsae] 0.0
blast NP_001016145 hypothetical protein LOC548899 [Xenopus tropicalis] gb|AAH91018.1| Hypothetical protein LOC548899 [Xenopus tropicalis] 2.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003788 EMBL-EBI Protein of unknown function DUF185 1.0E-126
Pfam IPR003788 EMBL-EBI Protein of unknown function DUF185 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:181878_AT
gatattcccgacggattcactgtcttcataggaaacgaatttctcgatgctcttccaatt
catcaatttcataaatcgggagactcgtggaacgaagtttacgtaaatcttacgaaggat
ggggatttgtgtttcatgaaatctaaaggagaaaatttacatacaaaaggactaatccct
tccgcaattcgtgatgactcatctcgtgtaacatgggaatgctcgcctgaatctggaacc
gttgtgaatcaaatcgttgatagaattacaacatttggaggattctctcttctagtcgac
tatgggcatgacggttctcgaaacacgcattctttccgtgcatacaagaatcacaagcaa
gttgatacactggaaaatcctggattggcagatttaactgctgatgtcgactttggatac
ttatcgactcttgtcaaagatcgtgttgttatctacggaccaaatgagcaaagagaattc
cttgctcaacttggaattgaacacaggctacgacgcttattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATTCCCGACGGATTCACTGTCT 684 425 592 Antisense
GAAACGAATTTCTCGATGCTCTTCC 465 355 623 Antisense
TCCCTTCCGCAATTCGTGATGACTC 164 597 767 Antisense
GTGATGACTCATCTCGTGTAACATG 527 483 782 Antisense
GGAATGCTCGCCTGAATCTGGAACC 344 533 807 Antisense
TGGAGGATTCTCTCTTCTAGTCGAC 471 549 867 Antisense
GACTATGGGCATGACGGTTCTCGAA 498 371 889 Antisense
GAAACACGCATTCTTTCCGTGCATA 124 357 911 Antisense
ACTGCTGATGTCGACTTTGGATACT 317 99 988 Antisense
TTGGATACTTATCGACTCTTGTCAA 78 709 1004 Antisense
GAACACAGGCTACGACGCTTATTGC 338 351 1090 Antisense
Sequence Source Affymetrix Proprietary Database