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[181877_at]

Description F56H1.3 /REP_DB=WormBase Gene ID /WP=CE17914 /TR=O76369 /GB=AAC19199.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 0.8
(-3)
A 		5.2
(0.1)
A 		1.4
(-2.6)
A 		9.4
(3)
A 		9
B 2.8
(-3)
A 		12.8
(2.8)
A 		3.2
(-2.8)
A 		13.2
(3)
A 		10
C 3.4
(-2.7)
A 		1.6
(-3)
A 		2.5
(-2.9)
A 		41.9
(3)
A 		40
avr 2.3
(-3) 		6.5
(-1.7) 		2.4
(-3) 		21.5
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 1.2
(-3)
A 		3.7
(-2)
A 		4.1
(-1.9)
A 		4
(-1.9)
A 		3.6
(-2.1)
A 		16.5
(3)
A 		15
B 2.6
(-2.6)
A 		8.8
(-1)
A 		1.2
(-3)
A 		2.2
(-2.7)
A 		11.8
(-0.2)
A 		23.8
(3)
A 		23
C 0.9
(-3)
A 		33.5
(1.2)
A 		3.4
(-2.7)
A 		47.4
(3)
A 		3.3
(-2.7)
A 		18
(-0.8)
A 		47
avr 1.6
(-3) 		15.3
(1.6) 		2.9
(-2.6) 		17.9
(2.5) 		6.2
(-1.4) 		19.4
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.3
(-3)
A 		1.1
(1.4)
A 		0.4
(-2.5)
A 		1.4
(3)
A 		1
B 0.9
(-2.8)
A 		3.2
(3)
A 		0.8
(-3)
A 		2.8
(2)
A 		2
C 1.1
(-2.5)
A 		0.5
(-3)
A 		0.9
(-2.6)
A 		7.1
(3)
A 		7
avr 0.8
(-2.8) 		1.6
(-1.3) 		0.7
(-3) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.2
(-3)
A 		1.3
(-1.3)
A 		0.9
(-1.9)
A 		1
(-1.7)
A 		1.1
(-1.6)
A 		4
(3)
A 		4
B 0.9
(-2.6)
A 		2.9
(-1.2)
A 		0.3
(-3)
A 		0.6
(-2.8)
A 		4.8
(0.1)
A 		8.9
(3)
A 		9
C 0.3
(-3)
A 		10.2
(3)
A 		0.9
(-2.6)
A 		9.5
(2.6)
A 		1.1
(-2.5)
A 		6
(0.5)
A 		10
avr 0.5
(-3) 		4.8
(1.4) 		0.7
(-2.8) 		3.7
(0.3) 		2.3
(-1.1) 		6.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181877_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2158
Sequence Type Exemplar sequence
Representative Public ID F56H1.3 NCBI
Target Description F56H1.3 /REP_DB=WormBase Gene ID /WP=CE17914 /TR=O76369 /GB=AAC19199.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059269 NCBI Caenorhabditis elegans F56H1.3 (F56H1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000038425 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5736619:5738908:-1 9/11 None
SNAP00000038413 ENSEMBL cdna:SNAP chromosome:CEL140:I:5737929:5739177:-1 10/11 None
F56H1.3 ENSEMBL cdna:known chromosome:CEL140:I:5737929:5743978:-1 gene:F56H1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5737928-5743978(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H1.3
Entrez Gene 186411 Entrez gene
SwissProt O76369 EMBL-EBI
WormBase CE17914 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19199 Hypothetical protein F56H1.3 [Caenorhabditis elegans] ref|NP_491670.1| F56H1.3 [Caenorhabditis elegans] 0.0
blast AAC19199 Hypothetical protein F56H1.3 [Caenorhabditis elegans] ref|NP_491670.1| F56H1.3 [Caenorhabditis elegans] 1.0E-113
blast AAC19199 Hypothetical protein F56H1.3 [Caenorhabditis elegans] ref|NP_491670.1| F56H1.3 [Caenorhabditis elegans] 1.0E-103
blast AAA50666 Hypothetical protein C18H2.4 [Caenorhabditis elegans] ref|NP_498677.1| C18H2.4 [Caenorhabditis elegans] 8.0E-90
blast CAB02703 Hypothetical protein C01G10.1 [Caenorhabditis elegans] ref|NP_506722.1| C01G10.1 [Caenorhabditis elegans] 1.0E-75
blast AAF39929 Hypothetical protein K09D9.11 [Caenorhabditis elegans] ref|NP_504115.1| K09D9.11 [Caenorhabditis elegans] 4.0E-75
blast CAB02703 Hypothetical protein C01G10.1 [Caenorhabditis elegans] ref|NP_506722.1| C01G10.1 [Caenorhabditis elegans] 4.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 3.6E-27
Pfam IPR001357 EMBL-EBI BRCT 1.3E-9
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 0.0011
Pfam IPR001357 EMBL-EBI BRCT 5.7E-9
Pfam IPR001357 EMBL-EBI BRCT 5.8E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491670.1 2 38-60,797-819
F56H1.3 2 38-60,797-819
GENEFINDER00000038425 1 187-209
Sequence
Target Sequence 
>C. ELEGANS:181877_AT
gtggctgtcagaaaggctcatacatctgatgaacaaatgtcaactacaactcattgtgtt
gtaaaaaccaacgaaaatggaatattggaaactgaaagtctggaaatatttttctggatt
ttcaatggaactataattgtgaaagagcaatggatgagtgattgtcttcaagatgaacga
attattgaacaagactctaaatatttggtagaaaaagtcaagttcaaaggaattgtctat
gatacagtacttcaatggtcaaactcaattgcaaaaggggatattccatatttgtatggg
gtatttgcagtggttgttatgcaagaatacagtaatttgttctctctgactgcaattatg
aattctcaaggaggtttgttgatggatgagtttccatcaaaatataattacaatattgga
tcacatccatatcttcattcacacctgggaccacttttcattattcacgacggaaagtca
aagttggatgtatacaaaacagattcggataagatgtacacgttgtttacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCTGTCAGAAAGGCTCATACAT 610 491 2695 Antisense
AATGTCAACTACAACTCATTGTGTT 608 163 2730 Antisense
GAATTGTCTATGATACAGTACTTCA 505 323 2924 Antisense
AGTACTTCAATGGTCAAACTCAATT 207 63 2940 Antisense
GTATGGGGTATTTGCAGTGGTTGTT 52 457 2988 Antisense
GTAATTTGTTCTCTCTGACTGCAAT 41 463 3026 Antisense
GGAGGTTTGTTGATGGATGAGTTTC 254 517 3064 Antisense
GGATCACATCCATATCTTCATTCAC 473 511 3112 Antisense
CCATATCTTCATTCACACCTGGGAC 698 269 3121 Antisense
ACCACTTTTCATTATTCACGACGGA 468 83 3144 Antisense
GATAAGATGTACACGTTGTTTACGG 478 421 3202 Antisense
Sequence Source Affymetrix Proprietary Database