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[181876_at]

Description C04G6.2 /REP_DB=WormBase Gene ID /WP=CE27792 /TR=Q17639 /GB=AAK68160.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 57      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 26.6
(-3)
A 		171.1
(1.9)
A 		204.1
(3)
A 		42.7
(-2.5)
A 		178
B 44.7
(-2.1)
A 		144.6
(1.3)
A 		195.3
(3)
A 		19.4
(-3)
A 		176
C 16.1
(-3)
A 		164.3
(3)
A 		159.3
(2.8)
A 		23.2
(-2.7)
A 		148
avr 29.1
(-3) 		160
(2) 		186.2
(3) 		28.4
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 33.5
(-3)
A 		78.6
(3)
A 		54.9
(-0.2)
A 		58.4
(0.3)
A 		56.9
(0.1)
A 		38
(-2.4)
A 		45
B 10.9
(-3)
A 		74.2
(2.7)
A 		77.1
(3)
A 		49.6
(0.5)
A 		69
(2.3)
A 		33.1
(-1)
A 		66
C 24.3
(-3)
A 		43.5
(-1.5)
A 		103.4
(3)
A 		90.5
(2)
A 		76.4
(1)
A 		46.4
(-1.3)
A 		79
avr 22.9
(-3) 		65.4
(1.6) 		78.5
(3) 		66.2
(1.7) 		67.4
(1.8) 		39.2
(-1.2) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 9.7
(-2.6)
A 		37.1
(0.9)
A 		53.3
(3)
A 		6.2
(-3)
A 		47
B 14.2
(-1.5)
A 		35.7
(1.6)
A 		45.2
(3)
A 		4.1
(-3)
A 		41
C 5.3
(-2.8)
A 		47.2
(2)
A 		55.5
(3)
A 		3.9
(-3)
A 		52
avr 9.7
(-2.4) 		40
(1.5) 		51.3
(3) 		4.7
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.2
(-3)
A 		28
(3)
A 		12
(-1.4)
A 		14.8
(-0.6)
A 		17.2
(0)
A 		9.2
(-2.2)
A 		22
B 3.8
(-3)
A 		24.7
(2.2)
A 		18.7
(0.7)
A 		13.2
(-0.7)
A 		28
(3)
A 		12.3
(-0.9)
A 		24
C 9
(-3)
A 		13.3
(-1.5)
A 		26.3
(3)
A 		18.2
(0.2)
A 		24.7
(2.4)
A 		15.5
(-0.7)
A 		17
avr 6.3
(-3) 		22
(2.5) 		19
(1.5) 		15.4
(0.2) 		23.3
(3) 		12.3
(-0.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181876_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4565
Sequence Type Exemplar sequence
Representative Public ID C04G6.2 NCBI
Target Description C04G6.2 /REP_DB=WormBase Gene ID /WP=CE27792 /TR=Q17639 /GB=AAK68160.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062540 NCBI Caenorhabditis elegans C04G6.2 (C04G6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000008317 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5093230:5099260:1 11/11 None
C04G6.2 ENSEMBL cdna:known chromosome:CEL140:II:5092768:5095353:1 gene:C04G6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008308 5/11 Cross Hyb Matching Probes None
SNAP00000008309 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5091400-5095351(+) 93.67 100.0
Public Domain and Genome References
Gene Title
Ensembl C04G6.2
Entrez Gene 182236 Entrez gene
SwissProt Q17639 EMBL-EBI
WormBase CE27792 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68160 Hypothetical protein C04G6.2 [Caenorhabditis elegans] ref|NP_494941.1| C04G6.2 [Caenorhabditis elegans] 1.0E-145
blast T29596 hypothetical protein C04G6.2 - Caenorhabditis elegans 1.0E-145
blast AAK68160 Hypothetical protein C04G6.2 [Caenorhabditis elegans] ref|NP_494941.1| C04G6.2 [Caenorhabditis elegans] 1.0E-118
blast T29596 hypothetical protein C04G6.2 - Caenorhabditis elegans 1.0E-118
blast AAC68787 Hypothetical protein F54D10.9 [Caenorhabditis elegans] ref|NP_494664.1| F54D10.9 [Caenorhabditis elegans] 4.0E-28
blast CAC14395 Hypothetical protein Y116F11B.2 [Caenorhabditis elegans] emb|CAC15860.1| Hypothetical protein Y116F11B.2 [Caenorhabditis elegans] ref|NP_507839.1| Y116F11B.2 [Caenorhabditis elegans] 9.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 9.6E-107
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 3.2E-114
Sequence
Target Sequence 
>C. ELEGANS:181876_AT
caactctaacattagctccgaacccctgcacaatgtgtgctccaatttacaatactggat
gcatgggagttggaatgccaagtcccacagattggtgtgttattggagatgatattcccg
ttacttattcacttgtagatgatggtgcaggacttattagttgcgaaacgacattacaat
gcccaactggaacatttgcttattttgtagcaggaaccgaaatgcaaggaagcaacggag
gcactgattcatacacagtcagctgcgaagaatcggcgtgctctgcttgcacaccaatct
acaatactggttgcatgggatatggtgtccccagtccgacaaattggtgtgctattggag
aagatattccagtgacttatacaattggaataaatgattacgggtctactgcttgccaaa
caacgctccaatgtccttccggaactattgcatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTCTAACATTAGCTCCGAACCC 441 187 524 Antisense
GAACCCCTGCACAATGTGTGCTCCA 62 345 543 Antisense
GGAGTTGGAATGCCAAGTCCCACAG 413 517 589 Antisense
ATATTCCCGTTACTTATTCACTTGT 151 19 635 Antisense
GCAACGGAGGCACTGATTCATACAC 708 319 755 Antisense
AGCTGCGAAGAATCGGCGTGCTCTG 433 81 784 Antisense
TCTGCTTGCACACCAATCTACAATA 221 609 805 Antisense
GCATGGGATATGGTGTCCCCAGTCC 393 307 836 Antisense
GTCCCCAGTCCGACAAATTGGTGTG 280 473 850 Antisense
ATGATTACGGGTCTACTGCTTGCCA 230 47 917 Antisense
ATGTCCTTCCGGAACTATTGCATAT 378 49 954 Antisense
Sequence Source Affymetrix Proprietary Database