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[181872_at]

Description K04G11.2 /REP_DB=WormBase Gene ID /WP=CE11744 /TR=Q93846 /GB=CAB01759.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 17      6grp_cgc > 79      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 13.5
(-3)
A 		126.3
(-0.4)
P 		103.6
(-1)
M 		278.3
(3)
P 		265
B 26.3
(-3)
A 		96.1
(-1)
A 		107.7
(-0.7)
P 		239.5
(3)
P 		213
C 44.9
(-3)
A 		92.1
(-1.5)
M 		108
(-1)
P 		236.3
(3)
P 		191
avr 28.2
(-3) 		104.8
(-0.9) 		106.4
(-0.9) 		251.4
(3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 29.4
(-3)
A 		66.7
(-1.5)
M 		67.5
(-1.5)
A 		60.8
(-1.7)
A 		139.6
(1.4)
P 		179.9
(3)
P 		151
B 70.4
(-1.2)
P 		37.2
(-2.9)
A 		35
(-3)
A 		69.4
(-1.3)
P 		133.5
(1.9)
P 		155.3
(3)
P 		120
C 50.1
(-3)
A 		82
(-1.7)
A 		93.5
(-1.2)
P 		59
(-2.6)
P 		193
(3)
P 		168.9
(2)
P 		143
avr 50
(-3) 		62
(-2.4) 		65.3
(-2.2) 		63.1
(-2.3) 		155.4
(2.4) 		168
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 4.9
(-3)
A 		27.4
(0.8)
P 		27.1
(0.7)
M 		40.7
(3)
P 		36
B 8.4
(-3)
A 		23.7
(-0.8)
A 		25
(-0.7)
P 		51
(3)
P 		43
C 14.9
(-3)
A 		26.5
(-0.2)
M 		37.6
(2.5)
P 		39.8
(3)
P 		25
avr 9.4
(-3) 		25.9
(-0.1) 		29.9
(0.6) 		43.8
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 5.4
(-3)
A 		23.7
(-0.1)
M 		14.7
(-1.5)
A 		15.4
(-1.4)
A 		42.1
(2.7)
P 		43.8
(3)
P 		38
B 24.5
(-1.1)
P 		12.4
(-2.5)
A 		8.5
(-3)
A 		18.4
(-1.8)
P 		54.3
(2.6)
P 		57.9
(3)
P 		49
C 18.6
(-2.2)
A 		25
(-1.4)
A 		23.8
(-1.6)
P 		11.9
(-3)
P 		62.4
(3)
P 		56.5
(2.3)
P 		51
avr 16.2
(-2.8) 		20.4
(-2.2) 		15.7
(-2.9) 		15.2
(-3) 		52.9
(3) 		52.7
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181872_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17314
Sequence Type Exemplar sequence
Representative Public ID K04G11.2 NCBI
Target Description K04G11.2 /REP_DB=WormBase Gene ID /WP=CE11744 /TR=Q93846 /GB=CAB01759.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077991
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000024613 ENSEMBL cdna:SNAP chromosome:CEL140:X:14339337:14340085:-1 10/11 None
GENEFINDER00000024621 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14339337:14340355:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_077991 8/11 Cross Hyb Matching Probes None
K04G11.2 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14339336-14340098(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01759 Hypothetical protein K04G11.2 [Caenorhabditis elegans] emb|CAE48506.1| Hypothetical protein K04G11.2 [Caenorhabditis elegans] ref|NP_510392.2| Suppressor/Enhancer of Lin-12 family member (sel-7) [Caenorhabditis elegans] gb|AAQ96213.1| SEL-7 [Caenorhabditis elegans] 6.0E-78
blast CAE63003 Hypothetical protein CBG07242 [Caenorhabditis briggsae] 4.0E-77
blast CAE63003 Hypothetical protein CBG07242 [Caenorhabditis briggsae] 4.0E-50
blast CAB01759 Hypothetical protein K04G11.2 [Caenorhabditis elegans] emb|CAE48506.1| Hypothetical protein K04G11.2 [Caenorhabditis elegans] ref|NP_510392.2| Suppressor/Enhancer of Lin-12 family member (sel-7) [Caenorhabditis elegans] gb|AAQ96213.1| SEL-7 [Caenorhabditis elegans] 5.0E-49
Sequence
Target Sequence 
>C. ELEGANS:181872_AT
ggcattttttaccagattaccctcaattttcacatcaccaccacaaacggtcatttcgga
ggcaccacctcagtcgttcacaccaagtgccacaaattcaacatcggacaagaccagcag
ctcattgaaggtatatcgtgtgaaataaataaatgccggagtcttttccagaccgaactc
aaaaccgaggattctgatggcgacttagatatggagggagaggaagacaccgaagaactg
ttcgataatgaaagtcagccaagccagagaaatcaatcgccgaaggaaaccgaggatgaa
aaggtcttagccgatggaccatttccagaaggagcagtgaaaagagccgccgagaaagca
gccagaagcttccagagcactcagccaaaggtacgttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTTTTTACCAGATTACCCTCA 489 509 28 Antisense
CACATCACCACCACAAACGGTCATT 108 195 58 Antisense
CAAACGGTCATTTCGGAGGCACCAC 607 189 71 Antisense
TCGTTCACACCAAGTGCCACAAATT 413 603 101 Antisense
AACATCGGACAAGACCAGCAGCTCA 678 137 127 Antisense
TAAATGCCGGAGTCTTTTCCAGACC 39 639 177 Antisense
AACCGAGGATTCTGATGGCGACTTA 15 147 210 Antisense
GTCTTAGCCGATGGACCATTTCCAG 214 467 331 Antisense
AAAGAGCCGCCGAGAAAGCAGCCAG 705 121 368 Antisense
AGCAGCCAGAAGCTTCCAGAGCACT 393 77 384 Antisense
GAGCACTCAGCCAAAGGTACGTTGT 57 387 402 Antisense
Sequence Source Affymetrix Proprietary Database