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[181871_at]

Description C03H5.7 /REP_DB=WormBase Gene ID /WP=CE07900 /TR=O16655 /GB=AAB66131.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 29      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 43.1
(0.3)
P 		31.3
(-0.8)
A 		8.4
(-3)
A 		72.2
(3)
A 		64
B 59.6
(3)
P 		46.4
(0.4)
P 		29.3
(-3)
A 		46.3
(0.4)
M 		30
C 54.6
(1.5)
P 		59.7
(3)
A 		47.9
(-0.4)
A 		38.9
(-3)
A 		21
avr 52.4
(3) 		45.8
(1.3) 		28.5
(-3) 		52.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 65.2
(3)
P 		59
(2.3)
P 		38.4
(0.1)
A 		31
(-0.8)
A 		31
(-0.8)
A 		10.6
(-3)
A 		55
B 44.4
(-0.4)
P 		40.8
(-0.7)
A 		83.9
(3)
P 		55.4
(0.5)
A 		31.8
(-1.5)
A 		14.2
(-3)
A 		70
C 56
(1.3)
P 		75.1
(3)
P 		66.1
(2.2)
P 		47.6
(0.6)
A 		6.3
(-3)
A 		6.2
(-3)
A 		69
avr 55.2
(2.1) 		58.3
(2.5) 		62.8
(3) 		44.7
(0.9) 		23
(-1.5) 		10.3
(-3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 15.7
(3)
P 		6.8
(-1)
A 		2.2
(-3)
A 		10.6
(0.7)
A 		14
B 19
(3)
P 		11.4
(-0.7)
P 		6.8
(-3)
A 		9.9
(-1.5)
M 		12
C 18.1
(3)
P 		17.2
(2.5)
A 		16.7
(2.3)
A 		6.6
(-3)
A 		12
avr 17.6
(3) 		11.8
(-0.9) 		8.6
(-3) 		9
(-2.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12
(0.1)
P 		21
(3)
P 		8.4
(-1.1)
A 		7.9
(-1.3)
A 		9.3
(-0.8)
A 		2.6
(-3)
A 		18
B 15.5
(1.1)
P 		13.6
(0.3)
A 		20.4
(3)
P 		14.7
(0.7)
A 		12.9
(0)
A 		5.3
(-3)
A 		15
C 20.8
(2.4)
P 		22.9
(3)
P 		16.8
(1.2)
P 		9.6
(-0.8)
A 		2.1
(-3)
A 		2.1
(-3)
A 		21
avr 16.1
(1.8) 		19.2
(3) 		15.2
(1.5) 		10.7
(-0.2) 		8.1
(-1.2) 		3.3
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5752
Sequence Type Exemplar sequence
Representative Public ID C03H5.7 NCBI
Target Description C03H5.7 /REP_DB=WormBase Gene ID /WP=CE07900 /TR=O16655 /GB=AAB66131.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061319 NCBI Caenorhabditis elegans C03H5.7 (C03H5.7) mRNA, complete cds. 11/11 None
SNAP00000020965 ENSEMBL cdna:SNAP chromosome:CEL140:II:381498:382040:1 11/11 None
C03H5.7 ENSEMBL cdna:known chromosome:CEL140:II:381498:382176:1 gene:C03H5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020978 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:381497-382176(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03H5.7
Entrez Gene 182184 Entrez gene
SwissProt O16655 EMBL-EBI
WormBase CE07900 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66131 Hypothetical protein C03H5.7 [Caenorhabditis elegans] ref|NP_493720.1| C03H5.7 [Caenorhabditis elegans] 1.0E-87
blast AAB66131 Hypothetical protein C03H5.7 [Caenorhabditis elegans] ref|NP_493720.1| C03H5.7 [Caenorhabditis elegans] 2.0E-82
blast CAA22068 Hypothetical protein Y40H7A.9 [Caenorhabditis elegans] ref|NP_502835.1| Y40H7A.9 [Caenorhabditis elegans] 1.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493720.1 3 44-66,96-118,122-144
C03H5.7 3 44-66,96-118,122-144
SNAP00000020965 3 44-66,96-118,122-144
Sequence
Target Sequence 
>C. ELEGANS:181871_AT
gattctattattcaagcccctattgcaaaaaccttcaagcttaatttacaaaatgtcacc
tatgtagctctattctatacaactgaggatggttggaacgagacgggaatcaaaattgga
ttcactagtcttgcggtaattgtaggatcaatgctggcgagctatatatttagctttgat
atttgggcacattatgtgcaaaatatacaagaacgtgcccctcctgcttatgatcgtggc
atgttcaacaatttgatctctcagatttttatcagctcaatgttctcatatcttccagta
ttaacagctctgttgcttccaattttccagcttgaaggccatgttctctactcgcaattt
tcaattttcttggcatcgtattcagttatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTATTATTCAAGCCCCTATTG 146 429 34 Antisense
GCCCCTATTGCAAAAACCTTCAAGC 257 283 49 Antisense
ATGTCACCTATGTAGCTCTATTCTA 591 47 86 Antisense
ATTGGATTCACTAGTCTTGCGGTAA 701 3 148 Antisense
CCCTCCTGCTTATGATCGTGGCATG 397 257 252 Antisense
GATCTCTCAGATTTTTATCAGCTCA 518 419 288 Antisense
AATGTTCTCATATCTTCCAGTATTA 239 163 312 Antisense
AACAGCTCTGTTGCTTCCAATTTTC 279 137 336 Antisense
TCCAGCTTGAAGGCCATGTTCTCTA 681 589 359 Antisense
ATGTTCTCTACTCGCAATTTTCAAT 585 47 374 Antisense
TCTTGGCATCGTATTCAGTTATCAG 73 619 401 Antisense
Sequence Source Affymetrix Proprietary Database