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[181869_at]

Description C34B2.4 /REP_DB=WormBase Gene ID /WP=CE16892 /TR=O44949 /GB=AAB97536.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 2.9
(-2.8)
A 		1.4
(-3)
A 		4.6
(-2.6)
A 		44.9
(3)
A 		44
B 2
(0.2)
A 		1.1
(-3)
A 		1.4
(-1.9)
A 		2.8
(3)
A 		2
C 7.5
(-1.4)
A 		3.6
(-2.4)
A 		1
(-3)
A 		25.4
(3)
A 		24
avr 4.1
(-2.4) 		2
(-3) 		2.3
(-2.9) 		24.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 7.6
(-2.1)
A 		2.5
(-3)
A 		2.3
(-3)
A 		38.7
(3)
A 		31.8
(1.9)
M 		7.2
(-2.2)
A 		36
B 3.5
(-2.8)
A 		6.5
(-2.3)
A 		2
(-3)
A 		2.2
(-3)
A 		43
(3)
P 		2.6
(-2.9)
A 		41
C 1.3
(-3)
A 		22.7
(1.6)
A 		17.3
(0.4)
A 		29.5
(3)
A 		4.1
(-2.4)
A 		25
(2)
A 		28
avr 4.1
(-3) 		10.6
(-1.2) 		7.2
(-2.2) 		23.5
(2.2) 		26.3
(3) 		11.6
(-1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1
(-2.3)
A 		0.3
(-3)
A 		1.2
(-2.1)
A 		6.6
(3)
A 		6
B 0.6
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.6
(3)
A 		0
C 2.5
(0.2)
A 		1
(-2.1)
A 		0.4
(-3)
A 		4.3
(3)
A 		4
avr 1.4
(-1.4) 		0.5
(-3) 		0.6
(-2.8) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.4
(-2.4)
A 		0.9
(-2.7)
A 		0.5
(-3)
A 		9.8
(3)
A 		9.6
(2.9)
M 		1.8
(-2.2)
A 		9
B 1.2
(-2.8)
A 		2.2
(-2.4)
A 		0.5
(-3)
A 		0.6
(-3)
A 		17.5
(3)
P 		1
(-2.8)
A 		17
C 0.5
(-3)
A 		6.9
(1.9)
A 		4.4
(-0)
A 		5.9
(1.1)
A 		1.3
(-2.4)
A 		8.4
(3)
A 		8
avr 1
(-3) 		3.3
(-1.4) 		1.8
(-2.4) 		5.4
(0.1) 		9.5
(3) 		3.7
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1805
Sequence Type Exemplar sequence
Representative Public ID C34B2.4 NCBI
Target Description C34B2.4 /REP_DB=WormBase Gene ID /WP=CE16892 /TR=O44949 /GB=AAB97536.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060392 NCBI Caenorhabditis elegans C34B2.4 (C34B2.4) mRNA, complete cds. 11/11 None
SNAP00000007242 ENSEMBL cdna:SNAP chromosome:CEL140:I:10679827:10680710:-1 9/11 None
C34B2.4 ENSEMBL cdna:known chromosome:CEL140:I:10679666:10680710:-1 gene:C34B2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007254 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5860180-5860996(+) 90.66 90.66
chrI:10679596-10680641(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34B2.4
Entrez Gene 183192 Entrez gene
SwissProt O44949 EMBL-EBI
WormBase CE16892 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB97536 Hypothetical protein C34B2.4 [Caenorhabditis elegans] ref|NP_492793.1| C34B2.4 [Caenorhabditis elegans] 9.0E-80
blast AAB96695 Hypothetical protein F33D11.1 [Caenorhabditis elegans] ref|NP_491698.1| F33D11.1 [Caenorhabditis elegans] 5.0E-77
blast CAE67326 Hypothetical protein CBG12788 [Caenorhabditis briggsae] 2.0E-73
blast AAB97536 Hypothetical protein C34B2.4 [Caenorhabditis elegans] ref|NP_492793.1| C34B2.4 [Caenorhabditis elegans] 1.0E-54
blast AAB96695 Hypothetical protein F33D11.1 [Caenorhabditis elegans] ref|NP_491698.1| F33D11.1 [Caenorhabditis elegans] 8.0E-53
blast CAE67326 Hypothetical protein CBG12788 [Caenorhabditis briggsae] 7.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.3E-9
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 1.7E-9
Pfam IPR001781 EMBL-EBI Zn-binding protein, LIM 3.2E-6
Sequence
Target Sequence 
>C. ELEGANS:181869_AT
gaacgaatgtggacattgctcggtgaaaattggcgaggagtcggctattctggcaaatgg
aaaagtctggcacgtgaatcatctgctttgcgatctgtgcaaatgccgtatcaatgacgg
ggagaggtgtgttccacagaatggagtgatcctgtgctccgagtgccatatcaagacgac
tcgtcctatttgcaaaggttgtggcgagttcatcaagaccaacttttgtgaggcgctgaa
ttccacgtggcatcccacttgcttccaatgttctgtgtgccagaagccattaaaagtaga
tttccatcaacttccgaatcgaatgtgtgtccattctgattgtttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGAATGTGGACATTGCTCGGTG 400 347 15 Antisense
GAGTCGGCTATTCTGGCAAATGGAA 152 401 52 Antisense
AAAAGTCTGGCACGTGAATCATCTG 196 133 75 Antisense
GAATCATCTGCTTTGCGATCTGTGC 593 327 90 Antisense
GCGATCTGTGCAAATGCCGTATCAA 141 291 104 Antisense
GCCATATCAAGACGACTCGTCCTAT 203 281 179 Antisense
GACGACTCGTCCTATTTGCAAAGGT 460 379 189 Antisense
AAGACCAACTTTTGTGAGGCGCTGA 292 153 229 Antisense
TTTTGTGAGGCGCTGAATTCCACGT 464 665 238 Antisense
TAAAAGTAGATTTCCATCAACTTCC 148 639 305 Antisense
ATGTGTGTCCATTCTGATTGTTTCT 686 49 337 Antisense
Sequence Source Affymetrix Proprietary Database