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[181868_at]

Description R05D11.5 /REP_DB=WormBase Gene ID /WP=CE27195 /TR=Q21737 /GB=CAA99892.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 84      6grp_total > 68      4grp_total > 60      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 528.9
(3)
P 		493.9
(2)
P 		517.8
(2.7)
P 		314.9
(-3)
P 		214
B 541.5
(3)
P 		503.2
(1.7)
P 		460.1
(0.3)
P 		359.6
(-3)
P 		182
C 492.9
(0.1)
P 		577.9
(3)
P 		562
(2.4)
P 		404.9
(-3)
P 		173
avr 521.1
(2.9) 		525
(3) 		513.3
(2.6) 		359.8
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 606
1 2 3 4 5 6 range
A 735.3
(2.2)
P 		459.7
(-1.8)
P 		544.7
(-0.6)
P 		379.4
(-3)
P 		713.7
(1.9)
P 		788.7
(3)
P 		409
B 572.8
(-2.4)
P 		533.1
(-2.9)
P 		599.7
(-2.1)
P 		528.8
(-3)
P 		585.7
(-2.3)
P 		985.6
(3)
P 		457
C 506.3
(-2.4)
P 		561.3
(-1.8)
P 		458.5
(-2.9)
P 		565.4
(-1.7)
P 		453.3
(-3)
P 		976.4
(3)
P 		523
avr 604.8
(-1.4) 		518
(-2.6) 		534.3
(-2.4) 		491.2
(-3) 		584.2
(-1.7) 		916.9
(3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 192.6
(3)
P 		107.2
(-0.5)
P 		135.4
(0.7)
P 		46.1
(-3)
P 		147
B 172.7
(3)
P 		124.3
(-0)
P 		106.6
(-1.1)
P 		76.6
(-3)
P 		96
C 163.1
(1.5)
P 		166.1
(1.6)
P 		195.9
(3)
P 		68.3
(-3)
P 		128
avr 176.1
(3) 		132.5
(0.7) 		146
(1.4) 		63.7
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 271
1 2 3 4 5 6 range
A 135.5
(-1)
P 		163.5
(0.4)
P 		118.6
(-1.9)
P 		96.2
(-3)
P 		215.4
(3)
P 		192
(1.8)
P 		119
B 199.3
(-1.4)
P 		177.5
(-2)
P 		145.6
(-2.9)
P 		140.1
(-3)
P 		238
(-0.4)
P 		367.5
(3)
P 		227
C 187.7
(-0.9)
P 		171.3
(-1.4)
P 		116.7
(-2.9)
P 		113.7
(-3)
P 		146.7
(-2.1)
P 		326.8
(3)
P 		213
avr 174.2
(-1.1) 		170.8
(-1.2) 		127
(-2.7) 		116.7
(-3) 		200
(-0.2) 		295.4
(3) 		179
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1234
Sequence Type Exemplar sequence
Representative Public ID R05D11.5 NCBI
Target Description R05D11.5 /REP_DB=WormBase Gene ID /WP=CE27195 /TR=Q21737 /GB=CAA99892.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059923 NCBI Caenorhabditis elegans R05D11.9 (R05D11.9) mRNA, complete cds. 11/11 None
SNAP00000034018 ENSEMBL cdna:SNAP chromosome:CEL140:I:8600217:8604195:1 11/11 None
GENEFINDER00000034024 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8601154:8604195:1 11/11 None
R05D11.9.2 ENSEMBL cdna:known chromosome:CEL140:I:8601150:8604325:1 gene:R05D11.9 11/11 None
R05D11.9.1 ENSEMBL cdna:known chromosome:CEL140:I:8601152:8604345:1 gene:R05D11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8600147-8604126(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05D11.9
Entrez Gene 172650 Entrez gene
SwissProt Q95ZR2 EMBL-EBI
WormBase CE32474 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42331 Hypothetical protein R05D11.9 [Caenorhabditis elegans] ref|NP_492324.2| R05D11.9 [Caenorhabditis elegans] 0.0
blast CAE67099 Hypothetical protein CBG12510 [Caenorhabditis briggsae] 0.0
blast CAE67099 Hypothetical protein CBG12510 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR008506 EMBL-EBI Protein of unknown function DUF788 9.0E-81
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492324.2 2 589-606,608-630
R05D11.9.2 2 589-606,608-630
R05D11.9.1 2 589-606,608-630
SNAP00000034018 5 20-42,49-66,100-122,536-558,562-584
GENEFINDER00000034024 2 589-606,608-630
Sequence
Target Sequence 
>C. ELEGANS:181868_AT
aacgttttgactactccaattgcattaaagatgatccaaaagctccaacaagaagctacg
aacttgggattgctgttaaattgacgacttctttggctcagaagctcaacgaactttcat
ttgttcagaaaattggagatcattattcacaacaaagtgtaattggtgcaattgctcgta
aagtaatgtatccaccggtgccaaatctagatccgaatgcaacagttccagcgtattcag
caagaattatacgatcacctcctttgcttcgtttacggtattttgccagctaccagtcaa
ttttcttcatgatatggctactattcgctctgaaatacggattaacttttacaattgtct
ctctgattctcatcgcactctcggtcactgtactcttgttcattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTTTTGACTACTCCAATTGCAT 404 143 2051 Antisense
GAAGCTCAACGAACTTTCATTTGTT 86 343 2151 Antisense
GTAAAGTAATGTATCCACCGGTGCC 325 457 2228 Antisense
ATCCACCGGTGCCAAATCTAGATCC 2 41 2240 Antisense
ATGCAACAGTTCCAGCGTATTCAGC 177 43 2267 Antisense
AGAATTATACGATCACCTCCTTTGC 538 75 2293 Antisense
TCGTTTACGGTATTTTGCCAGCTAC 238 603 2319 Antisense
TGCCAGCTACCAGTCAATTTTCTTC 348 587 2334 Antisense
ATGATATGGCTACTATTCGCTCTGA 546 45 2359 Antisense
TTACAATTGTCTCTCTGATTCTCAT 555 683 2399 Antisense
CGGTCACTGTACTCTTGTTCATTGA 197 243 2432 Antisense
Sequence Source Affymetrix Proprietary Database