[Home] | [Total List]

[181864_at]

Description ZK470.4 /REP_DB=WormBase Gene ID /WP=CE05089 /TR=Q23504 /GB=AAA80394.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 4.4
(-2.8)
A 		6.8
(-2.6)
A 		2.3
(-3)
A 		62.8
(3)
A 		61
B 3.1
(-2.6)
A 		2.7
(-3)
A 		5.7
(0)
A 		8.7
(3)
A 		6
C 5.7
(-2.8)
A 		5.8
(-2.8)
A 		3.2
(-3)
A 		76.7
(3)
A 		74
avr 4.4
(-2.9) 		5.1
(-2.8) 		3.7
(-3) 		49.4
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 8
(-1.6)
A 		2.3
(-2.8)
A 		1.5
(-2.9)
A 		5.7
(-2.1)
A 		30.7
(3)
A 		1.2
(-3)
A 		30
B 2
(-3)
A 		2.2
(-2.7)
A 		5.2
(1.2)
A 		6.6
(3)
A 		5
(0.9)
A 		5.5
(1.6)
A 		5
C 1.2
(-3)
A 		2.4
(-2.1)
A 		2.9
(-1.8)
A 		9.4
(3)
A 		6.7
(1)
A 		2.9
(-1.8)
A 		8
avr 3.7
(-2.3) 		2.3
(-3) 		3.2
(-2.5) 		7.2
(-0.5) 		14.1
(3) 		3.2
(-2.5) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.6
(-2.3)
A 		1.5
(-2.4)
A 		0.6
(-3)
A 		9.2
(3)
A 		9
B 1
(-1.5)
A 		0.7
(-3)
A 		1.3
(0)
A 		1.9
(3)
A 		1
C 1.9
(-2.6)
A 		1.7
(-2.7)
A 		1.1
(-3)
A 		12.9
(3)
A 		12
avr 1.5
(-2.6) 		1.3
(-2.7) 		1
(-3) 		8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.5
(-2.2)
A 		0.8
(-2.7)
A 		0.3
(-3)
A 		1.4
(-2.3)
A 		9.3
(3)
A 		0.3
(-3)
A 		9
B 0.7
(-3)
A 		0.7
(-3)
A 		1.3
(-0.4)
A 		1.7
(1.3)
A 		2
(2.6)
A 		2.1
(3)
A 		1
C 0.5
(-3)
A 		0.7
(-2.3)
A 		0.7
(-2.3)
A 		1.9
(1.9)
A 		2.2
(3)
A 		1
(-1.2)
A 		2
avr 0.9
(-2.7) 		0.7
(-3) 		0.8
(-2.8) 		1.7
(-1.4) 		4.5
(3) 		1.1
(-2.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181864_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17130
Sequence Type Exemplar sequence
Representative Public ID ZK470.4 NCBI
Target Description ZK470.4 /REP_DB=WormBase Gene ID /WP=CE05089 /TR=Q23504 /GB=AAA80394.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076302 NCBI Caenorhabditis elegans ZK470.4 (ZK470.4) mRNA, complete cds. 11/11 None
SNAP00000000130 ENSEMBL cdna:SNAP chromosome:CEL140:X:4139490:4139741:-1 11/11 None
ZK470.4 ENSEMBL cdna:known chromosome:CEL140:X:4139490:4139741:-1 gene:ZK470.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4139490-4139742(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK470.4
Entrez Gene 191325 Entrez gene
SwissProt Q23504 EMBL-EBI
WormBase CE05089 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80394 Hypothetical protein ZK470.4 [Caenorhabditis elegans] ref|NP_508703.1| ZK470.4 [Caenorhabditis elegans] 1.0E-41
Sequence
Target Sequence 
>C. ELEGANS:181864_AT
aacttttttcgaagaagcgactcagaaaaaaggagaagcacggaggcaaaaggcaagcga
ccaggtcagcgcccgcgccatgagcaagcaaaacgaggagcaagatcaaaccattaaacc
gcttgaccctgatattccaaactatagactccgaaatgatagagggattactgacgacta
tgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTTTTCGAAGAAGCGACTCAG 402 105 18 Antisense
AGAAAAAAGGAGAAGCACGGAGGCA 238 73 41 Antisense
GCACGGAGGCAAAAGGCAAGCGACC 7 317 55 Antisense
AAAGGCAAGCGACCAGGTCAGCGCC 410 119 66 Antisense
CCCGCGCCATGAGCAAGCAAAACGA 316 261 89 Antisense
AACGAGGAGCAAGATCAAACCATTA 426 145 109 Antisense
CAAACCATTAAACCGCTTGACCCTG 706 191 124 Antisense
ATTAAACCGCTTGACCCTGATATTC 209 3 130 Antisense
GCTTGACCCTGATATTCCAAACTAT 400 307 138 Antisense
TCCAAACTATAGACTCCGAAATGAT 580 587 153 Antisense
AGAGGGATTACTGACGACTATGAAG 592 67 178 Antisense
Sequence Source Affymetrix Proprietary Database