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[181863_s_at]

Description K02F6.3 /REP_DB=WormBase Gene ID /WP=CE11660 /TR=O16633 /GB=AAB66103.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 5.4
(-3)
A 		12.9
(-2.3)
A 		6.4
(-2.9)
A 		72.1
(3)
A 		67
B 25.6
(2.5)
A 		11.1
(-1.3)
A 		27.4
(3)
A 		4.6
(-3)
A 		23
C 32.5
(3)
A 		31.5
(2.7)
A 		9.7
(-3)
A 		10.5
(-2.8)
A 		23
avr 21.2
(-0.2) 		18.5
(-1.4) 		14.5
(-3) 		29.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 6.8
(-2.3)
A 		28.9
(1.6)
A 		3
(-3)
A 		3.7
(-2.9)
A 		37
(3)
A 		10
(-1.8)
A 		34
B 3.4
(-3)
A 		29.8
(0.6)
A 		7.7
(-2.4)
A 		13.2
(-1.6)
A 		46.8
(3)
A 		36
(1.5)
A 		43
C 4.4
(-2.9)
A 		45.9
(1.5)
A 		59.3
(3)
A 		3.9
(-3)
A 		4.8
(-2.9)
A 		14.7
(-1.8)
A 		55
avr 4.9
(-3) 		34.9
(3) 		23.3
(0.7) 		6.9
(-2.6) 		29.5
(1.9) 		20.2
(0.1) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2
(-2.8)
A 		2.8
(-2.3)
A 		1.7
(-3)
A 		10.6
(3)
A 		9
B 8.2
(3)
A 		2.7
(-1.6)
A 		6.3
(1.4)
A 		1
(-3)
A 		7
C 10.8
(3)
A 		9.1
(1.9)
A 		3.4
(-1.9)
A 		1.8
(-3)
A 		9
avr 7
(3) 		4.9
(-0.9) 		3.8
(-3) 		4.5
(-1.7) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.3
(-2.7)
A 		10.3
(2.5)
A 		0.7
(-3)
A 		0.9
(-2.9)
A 		11.2
(3)
A 		2.4
(-2)
A 		11
B 1.2
(-3)
A 		9.9
(-0.1)
A 		1.9
(-2.8)
A 		3.5
(-2.2)
A 		19
(3)
A 		13.4
(1.1)
A 		18
C 1.6
(-2.7)
A 		14
(2.5)
A 		15.1
(3)
A 		0.8
(-3)
A 		1.6
(-2.7)
A 		4.9
(-1.3)
A 		14
avr 1.4
(-3) 		11.4
(3) 		5.9
(-0.3) 		1.7
(-2.8) 		10.6
(2.5) 		6.9
(0.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181863_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5074
Sequence Type Exemplar sequence
Representative Public ID K02F6.3 NCBI
Target Description K02F6.3 /REP_DB=WormBase Gene ID /WP=CE11660 /TR=O16633 /GB=AAB66103.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061892(11), NM_061893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061892 NCBI Caenorhabditis elegans K02F6.4 (K02F6.4) mRNA, complete cds. 11/11 A 
NM_061893 NCBI Caenorhabditis elegans K02F6.3 (K02F6.3) mRNA, complete cds. 11/11 A 
SNAP00000019491 ENSEMBL cdna:SNAP chromosome:CEL140:II:2537792:2543921:1 11/11 None
SNAP00000019493 ENSEMBL cdna:SNAP chromosome:CEL140:II:2545115:2553506:1 11/11 None
GENEFINDER00000019501 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2535418:2544437:1 11/11 None
GENEFINDER00000019504 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2546290:2553813:1 11/11 None
K02F6.4 ENSEMBL cdna:known chromosome:CEL140:II:2538495:2543921:1 gene:K02F6.4 11/11 A 
K02F6.3 ENSEMBL cdna:known chromosome:CEL140:II:2546290:2549515:1 gene:K02F6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2546288-2550135(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl K02F6.4
K02F6.3
Entrez Gene 186907 Entrez gene
3565220 Entrez gene
SwissProt O16633 EMBL-EBI
O16632 EMBL-EBI
WormBase CE36874 Wormbase
CE11662 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66104 Hypothetical protein K02F6.4 [Caenorhabditis elegans] ref|NP_494293.1| K02F6.4 [Caenorhabditis elegans] 0.0
blast AAB66103 Hypothetical protein K02F6.3 [Caenorhabditis elegans] ref|NP_494294.2| K02F6.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-27
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.9E-24
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-7
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.9E-24
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-7
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-27
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 9.9E-9
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 2.9E-24
Pfam IPR002110 EMBL-EBI Ankyrin 9.5E-7
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 8.2E-40
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 9.9E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494293.1 1 781-803
NP_494294.2 1 788-810
K02F6.4 1 781-803
K02F6.3 1 788-810
SNAP00000019491 1 788-810
SNAP00000019493 1 783-805
GENEFINDER00000019501 1 974-996
GENEFINDER00000019504 1 789-811
Sequence
Target Sequence 
>C. ELEGANS:181863_S_AT
aaaactttgagcactagcgccgtgaatgatatcaaaaaagctgctccatccttcaagact
ctcggatccctgaagttgaactatgctaaccatcgctcgactttcaaaggtgcctcgttg
agtatcgtgaaaatcgatgaattcttctctgatttttttgcggctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTTTGAGCACTAGCGCCGTGA 629 129 2176 Antisense
GAGCACTAGCGCCGTGAATGATATC 330 389 2184 Antisense
ACTAGCGCCGTGAATGATATCAAAA 117 101 2188 Antisense
GATATCAAAAAAGCTGCTCCATCCT 622 425 2203 Antisense
CAAAAAAGCTGCTCCATCCTTCAAG 21 191 2208 Antisense
GTTGAACTATGCTAACCATCGCTCG 454 439 2250 Antisense
TGAACTATGCTAACCATCGCTCGAC 692 573 2252 Antisense
TCGCTCGACTTTCAAAGGTGCCTCG 510 597 2268 Antisense
CTCGACTTTCAAAGGTGCCTCGTTG 643 229 2271 Antisense
TTCTTCTCTGATTTTTTTGCGGCTG 229 691 2317 Antisense
CTTCTCTGATTTTTTTGCGGCTGGT 494 219 2319 Antisense
Sequence Source Affymetrix Proprietary Database