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[181862_at]

Description K02F6.3 /REP_DB=WormBase Gene ID /WP=CE11660 /TR=O16633 /GB=AAB66103.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 28.7
(-1)
A 		19.2
(-2)
A 		9.5
(-3)
A 		66.2
(3)
P 		57
B 33.6
(-3)
P 		44
(3)
A 		41.8
(1.7)
A 		36.3
(-1.4)
A 		10
C 24.1
(-3)
A 		33.3
(-2.4)
A 		27.6
(-2.8)
A 		122.2
(3)
P 		98
avr 28.8
(-2.7) 		32.2
(-2.3) 		26.3
(-3) 		74.9
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 36.4
(2.8)
A 		2.3
(-3)
A 		34.6
(2.5)
A 		11.7
(-1.4)
A 		37.7
(3)
A 		8.3
(-2)
A 		35
B 30.9
(-0.6)
A 		69.9
(3)
A 		27.7
(-0.9)
A 		5.2
(-3)
A 		46.3
(0.8)
A 		36.8
(-0.1)
A 		65
C 24.1
(-0.5)
A 		53.7
(3)
P 		34.3
(0.7)
A 		3.6
(-3)
A 		19.2
(-1.1)
A 		14.1
(-1.7)
A 		50
avr 30.5
(1) 		42
(3) 		32.2
(1.3) 		6.8
(-3) 		34.4
(1.7) 		19.7
(-0.8) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.5
(3)
A 		4.2
(-1.7)
A 		2.5
(-3)
A 		9.7
(2.4)
P 		8
B 10.7
(2.6)
P 		10.9
(3)
A 		9.7
(0.7)
A 		7.7
(-3)
A 		3
C 8
(-3)
A 		9.6
(-2.2)
A 		9.6
(-2.2)
A 		20.6
(3)
P 		13
avr 9.7
(-0.3) 		8.2
(-2) 		7.3
(-3) 		12.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 6.7
(0.3)
A 		0.8
(-3)
A 		7.5
(0.8)
A 		3
(-1.8)
A 		11.4
(3)
A 		2
(-2.3)
A 		11
B 10.8
(-0.4)
A 		23.3
(3)
A 		6.7
(-1.5)
A 		1.4
(-3)
A 		18.8
(1.8)
A 		13.7
(0.4)
A 		22
C 8.9
(0.1)
A 		16.4
(3)
P 		8.7
(0.1)
A 		0.7
(-3)
A 		6.2
(-0.9)
A 		4.7
(-1.5)
A 		16
avr 8.8
(0.6) 		13.5
(3) 		7.6
(-0) 		1.7
(-3) 		12.1
(2.3) 		6.8
(-0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5074
Sequence Type Exemplar sequence
Representative Public ID K02F6.3 NCBI
Target Description K02F6.3 /REP_DB=WormBase Gene ID /WP=CE11660 /TR=O16633 /GB=AAB66103.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061893
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000019504 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2546290:2553813:1 None
SNAP00000019493 ENSEMBL cdna:SNAP chromosome:CEL140:II:2545115:2553506:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061893 4/11 Cross Hyb Matching Probes A 
K02F6.3 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2546288-2550135(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66103 Hypothetical protein K02F6.3 [Caenorhabditis elegans] ref|NP_494294.2| K02F6.3 [Caenorhabditis elegans] 0.0
blast AAB66104 Hypothetical protein K02F6.4 [Caenorhabditis elegans] ref|NP_494293.1| K02F6.4 [Caenorhabditis elegans] 0.0
blast AAB66102 Hypothetical protein K02F6.2 [Caenorhabditis elegans] ref|NP_494295.2| K02F6.2 [Caenorhabditis elegans] 1.0E-178
blast AAB66102 Hypothetical protein K02F6.2 [Caenorhabditis elegans] ref|NP_494295.2| K02F6.2 [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-27
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 9.9E-9
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-27
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 9.9E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000019493 1 783-805
GENEFINDER00000019504 1 789-811
Sequence
Target Sequence 
>C. ELEGANS:181862_AT
ggatagtgttctggtgtatgctgctatttccattggcggtgtacttcttattacaattgg
tgctgtagctggatattttatttggagacatatacaggagaagaaaattcagaatgatcc
aaattattcacgccataatggattaactattcaaaatcaaattagagttcctggaccgaa
tgattataatcgtaacagatacataaagttgcatgaagcaattcgtgagaaaaactatga
aacatttaaacgatgtgtcgatgagggagcagatgtgaatgcctttggtgagttcgttac
agtgccgaccaatattttatttgttttcggttttgtggtgattcgtttgagttgttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATAGTGTTCTGGTGTATGCTGCT 290 511 2361 Antisense
GGTGTATGCTGCTATTTCCATTGGC 25 501 2373 Antisense
TTCCATTGGCGGTGTACTTCTTATT 553 695 2388 Antisense
GGTGCTGTAGCTGGATATTTTATTT 362 501 2419 Antisense
AATGATCCAAATTATTCACGCCATA 118 165 2473 Antisense
AGAGTTCCTGGACCGAATGATTATA 350 67 2524 Antisense
GGAGCAGATGTGAATGCCTTTGGTG 221 521 2626 Antisense
GCCTTTGGTGAGTTCGTTACAGTGC 584 279 2641 Antisense
GTTACAGTGCCGACCAATATTTTAT 581 445 2656 Antisense
TATTTGTTTTCGGTTTTGTGGTGAT 305 661 2678 Antisense
GTGGTGATTCGTTTGAGTTGTTCAA 468 489 2695 Antisense
Sequence Source Affymetrix Proprietary Database