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[181860_s_at]

Description ZC328.5 /REP_DB=WormBase Gene ID /WP=CE15189 /TR=O02052 /GB=AAK39379.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 10.5
(1)
A 		2.6
(-3)
A 		2.9
(-2.9)
A 		14.6
(3)
A 		12
B 27.8
(1.5)
A 		6.6
(-3)
A 		34.8
(3)
A 		23.9
(0.7)
A 		28
C 3.5
(-1.7)
A 		1.3
(-3)
A 		11.1
(3)
A 		8.4
(1.3)
A 		10
avr 13.9
(1.9) 		3.5
(-3) 		16.3
(3) 		15.6
(2.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.8
(-1.8)
A 		1.3
(-2.8)
A 		3.1
(0.9)
A 		4.1
(3)
A 		1.2
(-3)
A 		3.2
(1.1)
A 		3
B 0.7
(-3)
A 		1.4
(-2.7)
A 		15.9
(3)
A 		1.1
(-2.8)
A 		4.5
(-1.5)
A 		1.9
(-2.5)
A 		15
C 0.8
(-2.9)
A 		2.9
(-1.8)
A 		3.6
(-1.5)
A 		5
(-0.8)
A 		0.6
(-3)
A 		12.5
(3)
A 		12
avr 1.1
(-3) 		1.9
(-2.3) 		7.5
(3) 		3.4
(-0.8) 		2.1
(-2.1) 		5.9
(1.5) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.8
(3)
A 		0.6
(-3)
A 		0.8
(-2.6)
A 		2.1
(-0.2)
A 		3
B 8.9
(3)
A 		1.6
(-3)
A 		8.1
(2.3)
A 		5.1
(-0.1)
A 		7
C 1.2
(-1.6)
A 		0.4
(-3)
A 		3.9
(3)
A 		1.4
(-1.3)
A 		4
avr 4.6
(3) 		0.9
(-3) 		4.3
(2.5) 		2.9
(0.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.5
(-1.3)
A 		0.7
(0.4)
A 		1
(3)
A 		0.4
(-2.1)
A 		0.8
(1.3)
A 		1
B 0.3
(-3)
A 		0.5
(-2.7)
A 		3.9
(3)
A 		0.3
(-3)
A 		1.8
(-0.5)
A 		0.7
(-2.3)
A 		4
C 0.3
(-2.9)
A 		0.9
(-2)
A 		0.9
(-2)
A 		1
(-1.8)
A 		0.2
(-3)
A 		4.2
(3)
A 		4
avr 0.3
(-3) 		0.6
(-1.9) 		1.8
(2.6) 		0.8
(-1.1) 		0.8
(-1.1) 		1.9
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181860_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1158
Sequence Type Exemplar sequence
Representative Public ID ZC328.5 NCBI
Target Description ZC328.5 /REP_DB=WormBase Gene ID /WP=CE15189 /TR=O02052 /GB=AAK39379.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059444(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059444 NCBI Caenorhabditis elegans ZC328.5 (ZC328.5) mRNA, complete cds. 11/11 None
SNAP00000023531 ENSEMBL cdna:SNAP chromosome:CEL140:I:6414017:6415071:-1 9/11 None
GENEFINDER00000023540 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6414017:6415071:-1 9/11 None
ZC328.5 ENSEMBL cdna:known chromosome:CEL140:I:6414017:6415071:-1 gene:ZC328.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6413945-6415000(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC328.5
Entrez Gene 172341 Entrez gene
SwissProt O02052 EMBL-EBI
WormBase CE15189 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39379 Hypothetical protein ZC328.5 [Caenorhabditis elegans] ref|NP_491845.1| ZC328.5 [Caenorhabditis elegans] 2.0E-95
blast AAK39379 Hypothetical protein ZC328.5 [Caenorhabditis elegans] ref|NP_491845.1| ZC328.5 [Caenorhabditis elegans] 2.0E-92
blast CAE67180 Hypothetical protein CBG12616 [Caenorhabditis briggsae] 2.0E-52
blast CAE67180 Hypothetical protein CBG12616 [Caenorhabditis briggsae] 2.0E-49
Sequence
Target Sequence 
>C. ELEGANS:181860_S_AT
gtttcaaatctttactttcttggctctactagcagcggcgataaacattggcgagggcgc
aaagccatgtcgagccaaacgtccgaccactgaaccaccatcaacaactacagtggagag
ttcaacaactcgtgattcaaaagcaccttgtatggcagtatttgagaatatgaaagaaga
agaagatggttttgaagattatgcaatgggagttacaactgcagcatcagtaccagaatg
tagtaaaacttgtgaaactgatgtgaaatgtgcatacagtttctttaaaactaacaagtg
ttacgctttcgagagatttagaccaactgattttgtgaagaatggagggatgccacttat
tttcaagctatatctcaacgggacggtcacatgtgacactgctacaattgatgaattggc
aaatacgaaggagaaaatgtactatccagatggtggatcttattggcttttcaaaagtat
tttcgataattattctctcagtgttaaagatccagccatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCAAATCTTTACTTTCTTGGCT 406 449 18 Antisense
TTCTTGGCTCTACTAGCAGCGGCGA 701 689 34 Antisense
GCAGCGGCGATAAACATTGGCGAGG 463 313 49 Antisense
GCGAGGGCGCAAAGCCATGTCGAGC 256 291 68 Antisense
CCATGTCGAGCCAAACGTCCGACCA 698 271 82 Antisense
AAGCACCTTGTATGGCAGTATTTGA 390 151 158 Antisense
GAGGGATGCCACTTATTTTCAAGCT 173 401 362 Antisense
GCTATATCTCAACGGGACGGTCACA 71 303 384 Antisense
GGTCACATGTGACACTGCTACAATT 303 503 402 Antisense
GATGGTGGATCTTATTGGCTTTTCA 86 409 466 Antisense
CTCAGTGTTAAAGATCCAGCCATGG 425 227 514 Antisense
Sequence Source Affymetrix Proprietary Database