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[181859_at]

Description Y45F3A.5 /REP_DB=WormBase Gene ID /WP=CE19168 /TR=Q9XWY9 /GB=CAA21493.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 49      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 10.6
(-3)
A 		45.3
(1.5)
A 		57
(3)
A 		50.7
(2.2)
A 		46
B 13.3
(-2.8)
A 		46.5
(3)
A 		32.6
(0.6)
A 		11.9
(-3)
A 		35
C 36.9
(3)
A 		12.2
(-1.8)
A 		8.8
(-2.5)
A 		6.3
(-3)
A 		31
avr 20.3
(-3) 		34.7
(3) 		32.8
(2.2) 		23
(-1.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 11.7
(-2.6)
A 		9.7
(-3)
A 		38.7
(2.6)
A 		40.8
(3)
A 		34
(1.7)
A 		12.8
(-2.4)
A 		31
B 10.4
(-2.5)
A 		18.3
(-1.6)
A 		18.3
(-1.6)
A 		59.4
(3)
A 		43.3
(1.2)
A 		5.9
(-3)
A 		54
C 4.6
(-3)
A 		50.3
(0.7)
A 		6.8
(-2.8)
A 		79.3
(3)
A 		25.9
(-1.3)
A 		28.9
(-1)
A 		75
avr 8.9
(-3) 		26.1
(-1) 		21.3
(-1.5) 		59.8
(3) 		34.4
(0) 		15.9
(-2.2) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.8
(-3)
A 		9.8
(0.2)
A 		14.9
(3)
A 		7.4
(-1.1)
A 		11
B 4.2
(-1.9)
A 		11.5
(3)
A 		7.5
(0.3)
A 		2.5
(-3)
A 		9
C 12.2
(3)
A 		3.5
(-1.7)
A 		3.1
(-1.9)
A 		1.1
(-3)
A 		11
avr 6.7
(0.8) 		8.3
(2.8) 		8.5
(3) 		3.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.2
(-3)
A 		3.5
(-2)
A 		8.4
(1.5)
A 		10.4
(3)
A 		10.2
(2.9)
A 		3.1
(-2.3)
A 		8
B 3.6
(-2.5)
A 		6.1
(-1.5)
A 		4.5
(-2.1)
A 		15.7
(2.3)
A 		17.6
(3)
A 		2.2
(-3)
A 		15
C 1.7
(-3)
A 		15.3
(2.7)
A 		1.7
(-3)
A 		15.9
(3)
A 		8.4
(-0.2)
A 		9.7
(0.4)
A 		14
avr 2.5
(-3) 		8.3
(0) 		4.9
(-1.7) 		14
(3) 		12.1
(2) 		5
(-1.7) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6099
Sequence Type Exemplar sequence
Representative Public ID Y45F3A.5 NCBI
Target Description Y45F3A.5 /REP_DB=WormBase Gene ID /WP=CE19168 /TR=Q9XWY9 /GB=CAA21493.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066930 NCBI Caenorhabditis elegans Y45F3A.5 (Y45F3A.5) mRNA, complete cds. 11/11 None
GENEFINDER00000002993 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10585767:10586220:-1 11/11 None
Y45F3A.5 ENSEMBL cdna:known chromosome:CEL140:III:10585767:10586220:-1 gene:Y45F3A.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002981 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10585762-10586216(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F3A.5
Entrez Gene 189909 Entrez gene
SwissProt Q9XWY9 EMBL-EBI
WormBase CE19168 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:181859_AT
attggctatcgccaatcttgcggccaaacaaaagagagagaaaaaaaagcagcagaagaa
tggtgccgagcttgcggctcgtgcacgtaaggcgaaagccgagaaggccaagactagtga
gccccccgcacaaggtgtggttactcgtgctgccgctcaaaaagctcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGCTATCGCCAATCTTGCGGCC 161 3 60 Antisense
ATCGCCAATCTTGCGGCCAAACAAA 380 37 67 Antisense
GCAGAAGAATGGTGCCGAGCTTGCG 364 311 111 Antisense
AGAATGGTGCCGAGCTTGCGGCTCG 171 75 116 Antisense
TTGCGGCTCGTGCACGTAAGGCGAA 308 701 131 Antisense
GCTCGTGCACGTAAGGCGAAAGCCG 132 299 136 Antisense
GGCGAAAGCCGAGAAGGCCAAGACT 436 539 150 Antisense
GAAGGCCAAGACTAGTGAGCCCCCC 556 333 162 Antisense
CCCCCGCACAAGGTGTGGTTACTCG 457 259 182 Antisense
CACAAGGTGTGGTTACTCGTGCTGC 35 193 188 Antisense
TCGTGCTGCCGCTCAAAAAGCTCGG 378 605 204 Antisense
Sequence Source Affymetrix Proprietary Database