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[181858_s_at]

Description C42C1.4 /REP_DB=WormBase Gene ID /WP=CE16910 /TR=O44971 /GB=AAB97546.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 42      4grp_high_8_8 > 41      6grp_highest_nonorm > 72      6grp_total > 70      4grp_total > 54      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 307.6
(3)
P 		253.4
(-0.5)
P 		220.2
(-2.7)
P 		215.6
(-3)
P 		92
B 245.5
(2.5)
P 		249.9
(3)
P 		228.3
(0.4)
P 		200
(-3)
P 		50
C 322.7
(3)
P 		208.1
(-3)
P 		263
(-0.1)
P 		226.8
(-2)
P 		115
avr 291.9
(3) 		237.1
(-1.2) 		237.2
(-1.2) 		214.1
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 447
(1.4)
P 		382.8
(-2.6)
P 		427.5
(0.2)
P 		473.2
(3)
P 		376.3
(-3)
P 		425
(0)
P 		97
B 359.6
(-1)
P 		336.6
(-1.7)
P 		454.3
(1.8)
P 		496.6
(3)
P 		292.2
(-3)
P 		412.7
(0.5)
P 		204
C 286.6
(-3)
P 		406.8
(-0.3)
P 		389.2
(-0.7)
P 		549.3
(3)
P 		342.9
(-1.7)
P 		406.2
(-0.3)
P 		263
avr 364.4
(-2) 		375.4
(-1.6) 		423.7
(0.1) 		506.4
(3) 		337.1
(-3) 		414.6
(-0.3) 		169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 112
(3)
P 		55
(-1.3)
P 		57.6
(-1.1)
P 		31.6
(-3)
P 		80
B 78.3
(3)
P 		61.7
(0.2)
P 		52.9
(-1.3)
P 		42.6
(-3)
P 		36
C 106.8
(3)
P 		59.8
(-1.1)
P 		91.7
(1.7)
P 		38.2
(-3)
P 		69
avr 99
(3) 		58.8
(-0.9) 		67.4
(-0.1) 		37.5
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 82.4
(-3)
P 		136.1
(3)
P 		93.1
(-1.8)
P 		120
(1.2)
P 		113.6
(0.5)
P 		103.5
(-0.6)
P 		54
B 125.1
(-1)
P 		112.1
(-2.8)
P 		110.3
(-3)
P 		131.5
(-0.1)
P 		118.7
(-1.8)
P 		153.9
(3)
P 		44
C 106.2
(-1.8)
P 		124.1
(1.1)
P 		99
(-3)
P 		110.5
(-1.1)
P 		111
(-1.1)
P 		136
(3)
P 		37
avr 104.6
(-2.2) 		124.1
(1.6) 		100.8
(-3) 		120.7
(0.9) 		114.4
(-0.3) 		131.1
(3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181858_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9351
Sequence Type Exemplar sequence
Representative Public ID C42C1.4 NCBI
Target Description C42C1.4 /REP_DB=WormBase Gene ID /WP=CE16910 /TR=O44971 /GB=AAB97546.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027888(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027888 NCBI Caenorhabditis elegans C42C1.4a (C42C1.4) mRNA, complete cds. 11/11 None
SNAP00000027935 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12270661:12275954:-1 11/11 None
GENEFINDER00000027959 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12270661:12275954:-1 11/11 None
C42C1.4a ENSEMBL cdna:known chromosome:CEL140:IV:12270483:12275954:-1 gene:C42C1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027889 8/11 Cross Hyb Matching Probes None
C42C1.4b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178174 2 1 NM_001027888 181858_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12270666-12275960(-) 100.0 100.0
Public Domain and Genome References
Ensembl C42C1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023059 C42C1.4a [Caenorhabditis elegans] gb|AAB97546.1| Hypothetical protein C42C1.4a [Caenorhabditis elegans] 0.0
blast CAE62214 Hypothetical protein CBG06265 [Caenorhabditis briggsae] 0.0
blast XP_484535 PREDICTED: hypothetical protein LOC209018 [Mus musculus] 5.0E-69
Sequence
Target Sequence 
>C. ELEGANS:181858_S_AT
atgaagttttgctctcggcagtcttcaaaaaacgaaactagtgatcgaatgatgcgagtg
tttcaatttgtttctgaaagagtcgcagaatttgaagaagattctgaaaagcagaaaaag
atggacgagagtcttcgaacaatgtgcagacagatattgtcgactggaacaaaatatgcg
aaacaactagtggataaattacttgaaagtccatcttttgttgagtcaaccttcgaagac
aatggtggccttcttctcgatataatggcgtcttgtgaatatgaagccgaattgtatcaa
gaaatgatatatttaataagagaagaaaatctgtcccttgctcagaaactagagatggaa
gtgagtcgtcgtgcacctttgatgcacaatccgaactgcatcacatgtgagcagcctatg
cacaaaagtggatacgtcttccgatgcggtcatttccaacacattgaatgctcgacaaac
attgatcgtacttgtacttgtgatggaatacctgatcgactcgttgtgccacgcgaaaag
cctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAGTTTTGCTCTCGGCAGTCTT 142 41 3169 Antisense
AGTCCATCTTTTGTTGAGTCAACCT 231 61 3376 Antisense
GTGGCCTTCTTCTCGATATAATGGC 652 489 3413 Antisense
GAGAAGAAAATCTGTCCCTTGCTCA 675 391 3488 Antisense
TGAGTCGTCGTGCACCTTTGATGCA 227 567 3530 Antisense
GCACAATCCGAACTGCATCACATGT 673 317 3552 Antisense
CATCACATGTGAGCAGCCTATGCAC 551 213 3567 Antisense
TGGATACGTCTTCCGATGCGGTCAT 245 551 3597 Antisense
ATGCGGTCATTTCCAACACATTGAA 654 41 3612 Antisense
GAATACCTGATCGACTCGTTGTGCC 326 327 3674 Antisense
CGTTGTGCCACGCGAAAAGCCTGAT 499 245 3690 Antisense
Sequence Source Affymetrix Proprietary Database