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[181857_at]

Description C06E4.8 /REP_DB=WormBase Gene ID /WP=CE03956 /TR=Q17730 /GB=AAA82479.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      6grp_highest_nonorm > 90      6grp_total > 75      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 28.7
(-2.6)
A 		15.9
(-3)
A 		20.3
(-2.9)
A 		201.5
(3)
P 		186
B 37.3
(-1.7)
P 		20.3
(-3)
A 		33.6
(-2)
P 		98.4
(3)
P 		78
C 21.9
(-3)
A 		29.9
(-2.7)
A 		22.9
(-3)
A 		187.3
(3)
P 		165
avr 29.3
(-2.7) 		22
(-3) 		25.6
(-2.8) 		162.4
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 76
(-1.5)
P 		48.5
(-3)
P 		160.1
(3)
P 		129.3
(1.3)
P 		125
(1.1)
P 		120.4
(0.9)
P 		112
B 98.1
(-1.2)
P 		62.1
(-3)
P 		141.7
(1.1)
P 		134.4
(0.7)
P 		106.1
(-0.7)
P 		179.4
(3)
P 		117
C 78.8
(-2.2)
P 		80.2
(-2.1)
P 		63
(-3)
P 		181.1
(3)
P 		128.9
(0.3)
P 		162.1
(2)
P 		118
avr 84.3
(-1.6) 		63.6
(-3) 		121.6
(0.8) 		148.3
(2.6) 		120
(0.7) 		154
(3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 10.4
(-1.4)
A 		3.5
(-3)
A 		5.3
(-2.6)
A 		29.5
(3)
P 		26
B 11.9
(-0.4)
P 		5
(-3)
A 		7.8
(-2)
P 		21
(3)
P 		16
C 7.3
(-3)
A 		8.6
(-2.7)
A 		8
(-2.8)
A 		31.6
(3)
P 		24
avr 9.9
(-1.8) 		5.7
(-3) 		7
(-2.6) 		27.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 14
(-3)
P 		17.2
(-2.2)
P 		34.9
(2.3)
P 		32.8
(1.8)
P 		37.7
(3)
P 		29.3
(0.9)
P 		24
B 34.2
(-1.2)
P 		20.7
(-3)
P 		34.4
(-1.2)
P 		35.6
(-1.1)
P 		43.1
(-0.1)
P 		66.9
(3)
P 		46
C 29.2
(-0.9)
P 		24.5
(-1.7)
P 		16
(-3)
P 		36.4
(0.2)
P 		41.7
(1)
P 		54.3
(3)
P 		38
avr 25.8
(-2) 		20.8
(-3) 		28.4
(-1.4) 		34.9
(-0.1) 		40.8
(1.1) 		50.2
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181857_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8387
Sequence Type Exemplar sequence
Representative Public ID C06E4.8 NCBI
Target Description C06E4.8 /REP_DB=WormBase Gene ID /WP=CE03956 /TR=Q17730 /GB=AAA82479.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068759 NCBI Caenorhabditis elegans C06E4.8 (C06E4.8) mRNA, complete cds. 11/11 None
C06E4.8 ENSEMBL cdna:known chromosome:CEL140:IV:7284203:7285504:-1 gene:C06E4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7284208-7285510(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E4.8
Entrez Gene 182331 Entrez gene
SwissProt Q17730 EMBL-EBI
WormBase CE03956 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82479 Hypothetical protein C06E4.8 [Caenorhabditis elegans] ref|NP_501160.1| C06E4.8 [Caenorhabditis elegans] 1.0E-142
Sequence
Target Sequence 
>C. ELEGANS:181857_AT
gatggaactcaatgccttggataaagaaaacgggaagttggttgatatggtatttgaaat
ttcgagaaattggactcaaattaatactttattcgcggagttttttggaatgaatgaaac
tttgaaaattattgaagaaaatggagacatgtatggtcatctgacggaaatcatcaagaa
tagaatgatggtaaaatcgaaaataataatagcactttacgaagataccaagaaaattgt
actggaattgctgaaatcaattgaaagttttctagacttttatgtgctaggaatggatga
gaatcatcgcattggaatgatcaaaatgttgaatttaatgaaaaacgttccttttgctgt
tttaaacgagaaagagcgcattgatggaacaatcgacgagatcaagaaaaccgtaacaga
aattgaatcagaactactgagacttccactgagcaatttgagacctcgccgatcaattcg
acaaatattatgggaagaagtggatttatatgaagcaatcagaactggaacagtgtttgc
cttaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGAACTCAATGCCTTGGATAAA 485 407 282 Antisense
GGACTCAAATTAATACTTTATTCGC 138 525 353 Antisense
GGAGACATGTATGGTCATCTGACGG 521 519 424 Antisense
GGTCATCTGACGGAAATCATCAAGA 384 503 436 Antisense
AGACTTTTATGTGCTAGGAATGGAT 419 69 555 Antisense
TAATGAAAAACGTTCCTTTTGCTGT 126 567 617 Antisense
GAGCGCATTGATGGAACAATCGACG 420 385 655 Antisense
AACTACTGAGACTTCCACTGAGCAA 408 139 713 Antisense
CACTGAGCAATTTGAGACCTCGCCG 214 199 728 Antisense
GACCTCGCCGATCAATTCGACAAAT 14 383 743 Antisense
GAACTGGAACAGTGTTTGCCTTAGA 549 345 803 Antisense
Sequence Source Affymetrix Proprietary Database