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[181856_at]

Description ZC190.4 /REP_DB=WormBase Gene ID /WP=CE18427 /TR=O76699 /GB=AAC26965.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 46      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_total > 46      4grp_total > 04      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 268.3
(-0.6)
P 		193.2
(-2)
P 		140.4
(-3)
P 		455.3
(3)
P 		315
B 202.3
(-1.9)
P 		136.7
(-3)
P 		213.8
(-1.7)
P 		501.7
(3)
P 		365
C 233.7
(-1.4)
P 		211.7
(-1.9)
P 		164.9
(-3)
P 		418.6
(3)
P 		254
avr 234.8
(-1.7) 		180.5
(-2.8) 		173
(-3) 		458.5
(3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 137
(-1.8)
A 		222.1
(1)
P 		100.6
(-3)
P 		239.5
(1.6)
P 		186.2
(-0.2)
P 		282
(3)
P 		181
B 170.8
(-0.1)
P 		242
(3)
P 		181.8
(0.4)
P 		117.5
(-2.4)
P 		104
(-3)
P 		211.8
(1.7)
P 		138
C 267.3
(3)
P 		203.2
(0.3)
P 		209.1
(0.5)
P 		231.5
(1.5)
P 		127.2
(-3)
P 		161.5
(-1.5)
P 		140
avr 191.7
(0.8) 		222.4
(3) 		163.8
(-1.2) 		196.2
(1.1) 		139.1
(-3) 		218.4
(2.7) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 97.7
(3)
P 		41.9
(-2.5)
P 		36.7
(-3)
P 		66.6
(-0.1)
P 		61
B 64.5
(-0.5)
P 		33.8
(-3)
P 		49.6
(-1.7)
P 		106.9
(3)
P 		73
C 77.4
(3)
P 		60.9
(-2)
P 		57.5
(-3)
P 		70.6
(0.9)
P 		20
avr 79.9
(2.7) 		45.5
(-3) 		47.9
(-2.6) 		81.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 25.2
(-2.7)
A 		79
(3)
P 		21.9
(-3)
P 		60.7
(1.1)
P 		56.2
(0.6)
P 		68.7
(1.9)
P 		57
B 59.4
(0.4)
P 		80.6
(3)
P 		44.1
(-1.4)
P 		31.1
(-3)
P 		42.2
(-1.7)
P 		79
(2.8)
P 		50
C 99.1
(3)
P 		62
(-0.8)
P 		53.2
(-1.8)
P 		46.6
(-2.4)
P 		41.2
(-3)
P 		54
(-1.7)
P 		58
avr 61.2
(0.8) 		73.9
(3) 		39.7
(-3) 		46.1
(-1.9) 		46.5
(-1.8) 		67.2
(1.8) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12101
Sequence Type Exemplar sequence
Representative Public ID ZC190.4 NCBI
Target Description ZC190.4 /REP_DB=WormBase Gene ID /WP=CE18427 /TR=O76699 /GB=AAC26965.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072832(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072832 NCBI Caenorhabditis elegans ZC190.4 (ZC190.4) mRNA, complete cds. 11/11 None
SNAP00000000630 ENSEMBL cdna:SNAP chromosome:CEL140:V:8671671:8673200:1 11/11 None
GENEFINDER00000000641 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8668667:8673442:1 11/11 None
ZC190.4 ENSEMBL cdna:known chromosome:CEL140:V:8668653:8674253:1 gene:ZC190.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8668667-8672896(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC190.4
Entrez Gene 179248 Entrez gene
SwissProt O76699 EMBL-EBI
WormBase CE31136 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26965 Hypothetical protein ZC190.4 [Caenorhabditis elegans] ref|NP_505233.2| ZC190.4 [Caenorhabditis elegans] 0.0
blast CAE58340 Hypothetical protein CBG01454 [Caenorhabditis briggsae] 1.0E-180
blast CAE58340 Hypothetical protein CBG01454 [Caenorhabditis briggsae] 1.0E-141
blast XP_867189 PREDICTED: similar to CG5263-PA, isoform A isoform 3 [Canis familiaris] 1.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 6.4E-9
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 3.9E-7
Sequence
Target Sequence 
>C. ELEGANS:181856_AT
atgagagcttcactccaaaccaacaacgacgagcattcttaatgaagaaaaacgcgagga
gctacgcaaatccagaagaaattcgccgtcatcgaatgggaatggtgtccagttcacaat
gtgaaggatgccaccatgctgaagtagtcaatcgagaaagattaatggaacttcaagatc
gtcaagtacgacaagcacgtggtgatctagtgggtctgcctactctttcatcctgcagtg
ctctcttggatatgaatgctccaaaagagaatgctcgtttcgaattcaatgttccacctg
taactacagctcaacgaattcaaaaacgaccagcacgtattgaagacgacgaatggcttg
ctaccagtggatctccaaagataactgcagcttctccatctgaaacagttctttttgaga
ctttgattcttccacaaatgaaggataatcacttttgggccaatgcaagaaatatttggg
gacacgatttaaacatgccatccacgtctcttggactccctcttttccaagaatcggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGAGCTTCACTCCAAACCAACA 401 45 1076 Antisense
ACGCGAGGAGCTACGCAAATCCAGA 36 91 1127 Antisense
GGATGCCACCATGCTGAAGTAGTCA 486 513 1201 Antisense
GCACGTGGTGATCTAGTGGGTCTGC 233 315 1270 Antisense
TCATCCTGCAGTGCTCTCTTGGATA 241 621 1303 Antisense
ATTCAATGTTCCACCTGTAACTACA 50 13 1359 Antisense
AATGGCTTGCTACCAGTGGATCTCC 690 161 1427 Antisense
ATAACTGCAGCTTCTCCATCTGAAA 532 25 1456 Antisense
AGGATAATCACTTTTGGGCCAATGC 420 57 1517 Antisense
GATTTAAACATGCCATCCACGTCTC 176 429 1561 Antisense
ACTCCCTCTTTTCCAAGAATCGGAT 329 87 1590 Antisense
Sequence Source Affymetrix Proprietary Database