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[181854_at]

Description K09B3.2 /REP_DB=WormBase Gene ID /WP=CE11986 /TR=Q94267 /GB=AAB09106.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_high_8_8 > 05      6grp_highest_nonorm > 90      6grp_total > 93      4grp_total > 03      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1016
1 2 3 4 range
A 220.9
(-2.1)
P 		100.7
(-2.8)
P 		64.4
(-3)
A 		1079.9
(3)
P 		1016
B 234.4
(-2)
P 		106.5
(-2.9)
P 		89.7
(-3)
P 		991.9
(3)
P 		902
C 287.5
(-1.5)
P 		116
(-2.8)
P 		85.3
(-3)
P 		880.2
(3)
P 		795
avr 247.6
(-1.9) 		107.7
(-2.8) 		79.8
(-3) 		984
(3) 		904

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 143.9
(-2.4)
P 		145
(-2.3)
P 		151.2
(-2.1)
P 		125.3
(-3)
P 		305.3
(3)
P 		133.4
(-2.7)
P 		180
B 228.8
(-0)
P 		156.7
(-2.2)
P 		129.4
(-3)
P 		215.6
(-0.4)
P 		332
(3)
P 		128.2
(-3)
P 		204
C 154.6
(-0.7)
P 		132.2
(-1.3)
P 		71
(-3)
P 		135.2
(-1.2)
P 		290.1
(3)
P 		155
(-0.7)
P 		219
avr 175.8
(-1.2) 		144.6
(-2.1) 		117.2
(-3) 		158.7
(-1.7) 		309.1
(3) 		138.9
(-2.3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 80.4
(-0.3)
P 		21.9
(-2.8)
P 		16.8
(-3)
A 		158.1
(3)
P 		141
B 74.8
(-1.3)
P 		26.3
(-2.8)
P 		20.8
(-3)
P 		211.4
(3)
P 		191
C 95.2
(0.3)
P 		33.3
(-2.8)
P 		29.7
(-3)
P 		148.4
(3)
P 		119
avr 83.5
(-0.6) 		27.2
(-2.8) 		22.4
(-3) 		172.6
(3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 26.5
(-3)
P 		51.6
(-0.7)
P 		32.9
(-2.4)
P 		31.8
(-2.5)
P 		92.1
(3)
P 		32.5
(-2.5)
P 		66
B 79.6
(-0.2)
P 		52.2
(-1.8)
P 		31.4
(-3)
P 		57.1
(-1.5)
P 		134.9
(3)
P 		47.8
(-2)
P 		104
C 57.3
(0.1)
P 		40.3
(-1.2)
P 		18.1
(-3)
P 		27.2
(-2.3)
P 		93.9
(3)
P 		51.9
(-0.3)
P 		76
avr 54.5
(-1) 		48
(-1.5) 		27.5
(-3) 		38.7
(-2.2) 		107
(3) 		44.1
(-1.7) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181854_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10701
Sequence Type Exemplar sequence
Representative Public ID K09B3.2 NCBI
Target Description K09B3.2 /REP_DB=WormBase Gene ID /WP=CE11986 /TR=Q94267 /GB=AAB09106.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068013 NCBI Caenorhabditis elegans K09B3.2 (K09B3.2) mRNA, complete cds. 11/11 None
SNAP00000024797 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3793389:3793851:1 11/11 None
GENEFINDER00000024801 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3793055:3793851:1 11/11 None
K09B3.2 ENSEMBL cdna:known chromosome:CEL140:IV:3793490:3793851:1 gene:K09B3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3793495-3793857(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09B3.2
Entrez Gene 187189 Entrez gene
SwissProt Q94267 EMBL-EBI
WormBase CE11986 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI99629 beta-1,3-glucuronosyltransferase [Caenorhabditis briggsae] 1.0E-63
blast CAI99629 beta-1,3-glucuronosyltransferase [Caenorhabditis briggsae] 6.0E-63
blast AAB09106 Hypothetical protein K09B3.2 [Caenorhabditis elegans] ref|NP_500414.1| K09B3.2 [Caenorhabditis elegans] 9.0E-49
blast AAB09106 Hypothetical protein K09B3.2 [Caenorhabditis elegans] ref|NP_500414.1| K09B3.2 [Caenorhabditis elegans] 1.0E-48
blast CAA15837 Hypothetical protein C47F8.4 [Caenorhabditis elegans] ref|NP_493114.1| C47F8.4 [Caenorhabditis elegans] 2.0E-44
blast CAE63749 Hypothetical protein CBG08283 [Caenorhabditis briggsae] emb|CAE63748.1| Hypothetical protein CBG08282 [Caenorhabditis briggsae] 8.0E-44
blast CAI99629 beta-1,3-glucuronosyltransferase [Caenorhabditis briggsae] 9.0E-44
blast CAE63749 Hypothetical protein CBG08283 [Caenorhabditis briggsae] emb|CAE63748.1| Hypothetical protein CBG08282 [Caenorhabditis briggsae] 9.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 6.6E-32
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 1.5E-51
Pfam IPR005027 EMBL-EBI Glycosyl transferase, family 43 8.5E-52
Sequence
Target Sequence 
>C. ELEGANS:181854_AT
aacctgaaagtggtcctgaactctgatgcagtattcggtaccgcttgtaaacgcggcggt
ggtgccccggaaacatgtctgctggaggatatgggtctagaacgagaggacattgagcca
ttcggttatgagaaggataaagaccgtgaaatcctggtatggcatacaaaaaccagtacg
ccgaacatcgtgaaatccaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCTGAAAGTGGTCCTGAACTCTG 134 147 31 Antisense
AAGTGGTCCTGAACTCTGATGCAGT 401 159 38 Antisense
CTGATGCAGTATTCGGTACCGCTTG 656 237 53 Antisense
GGTACCGCTTGTAAACGCGGCGGTG 221 501 67 Antisense
GCTGGAGGATATGGGTCTAGAACGA 433 295 111 Antisense
GAGAGGACATTGAGCCATTCGGTTA 78 395 134 Antisense
GAGCCATTCGGTTATGAGAAGGATA 451 385 145 Antisense
AAGACCGTGAAATCCTGGTATGGCA 98 153 170 Antisense
ATGGCATACAAAAACCAGTACGCCG 273 53 189 Antisense
AAACCAGTACGCCGAACATCGTGAA 368 125 200 Antisense
CGCCGAACATCGTGAAATCCAACAA 128 257 209 Antisense
Sequence Source Affymetrix Proprietary Database