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[181852_at]

Description K02B12.8 /REP_DB=WormBase Gene ID /WP=CE27191 /TR=P90905 /GB=CAB00037.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 08      6grp_cgc > 77      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 72.1
(-2.6)
M 		66
(-3)
A 		109.8
(-0.4)
A 		166.3
(3)
P 		100
B 53
(-3)
A 		76.3
(-2)
A 		106.5
(-0.7)
A 		192.6
(3)
P 		140
C 77.5
(-2.2)
P 		54.1
(-3)
M 		85.7
(-1.9)
A 		232.5
(3)
P 		178
avr 67.5
(-2.9) 		65.5
(-3) 		100.7
(-1.4) 		197.1
(3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 44.2
(-3)
A 		90.4
(-1.4)
A 		111.6
(-0.7)
P 		184.5
(1.7)
P 		222.6
(3)
P 		192.3
(2)
P 		178
B 65
(-3)
A 		71.9
(-2.8)
P 		102.9
(-1.7)
A 		205.2
(1.9)
P 		236.3
(3)
P 		231.9
(2.8)
P 		171
C 95.7
(-2.5)
A 		77
(-3)
A 		129.6
(-1.6)
A 		298.2
(3)
P 		238
(1.4)
P 		250.6
(1.7)
P 		221
avr 68.3
(-3) 		79.8
(-2.6) 		114.7
(-1.3) 		229.3
(2.9) 		232.3
(3) 		224.9
(2.7) 		164
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 26.3
(2)
M 		14.3
(-3)
A 		28.7
(3)
A 		24.3
(1.2)
P 		14
B 16.9
(-3)
A 		18.8
(-2.5)
A 		24.7
(-1.1)
A 		41
(3)
P 		24
C 25.7
(-0.4)
P 		15.6
(-3)
M 		29.9
(0.6)
A 		39.2
(3)
P 		24
avr 23
(-0.8) 		16.2
(-3) 		27.8
(0.7) 		34.8
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 8.2
(-3)
A 		32.2
(-0.6)
A 		24.3
(-1.4)
P 		46.8
(0.9)
P 		67.2
(3)
P 		46.8
(0.9)
P 		59
B 22.6
(-3)
A 		23.9
(-2.9)
P 		25
(-2.8)
A 		54.4
(-0.4)
P 		96
(3)
P 		86.5
(2.2)
P 		73
C 35.5
(-1.8)
A 		23.5
(-3)
A 		33
(-2.1)
A 		60
(0.6)
P 		77
(2.3)
P 		83.9
(3)
P 		60
avr 22.1
(-3) 		26.5
(-2.5) 		27.4
(-2.5) 		53.7
(0.3) 		80.1
(3) 		72.4
(2.2) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181852_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2052
Sequence Type Exemplar sequence
Representative Public ID K02B12.8 NCBI
Target Description K02B12.8 /REP_DB=WormBase Gene ID /WP=CE27191 /TR=P90905 /GB=CAB00037.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059910
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K02B12.8 ENSEMBL cdna:known chromosome:CEL140:I:8537574:8539445:-1 gene:K02B12.8 A 
NM_059910 NCBI Caenorhabditis elegans Zip (yeast meiotic zipper) Homologous Protein family member (zhp-3) (zhp-3) mRNA, complete cds. A 
SNAP00000001150 ENSEMBL cdna:SNAP chromosome:CEL140:I:8537602:8539199:-1 None
GENEFINDER00000001151 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8537602:8539445:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8537524-8539130(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol zhp-3
Ensembl K02B12.8
Entrez Gene 172644 Entrez gene
SwissProt P90905 EMBL-EBI
WormBase CE34201 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00037 Hypothetical protein K02B12.8 [Caenorhabditis elegans] ref|NP_492311.2| Zip (yeast meiotic zipper) Homologous Protein family member (zhp-3) [Caenorhabditis elegans] 0.0
blast CAB00037 Hypothetical protein K02B12.8 [Caenorhabditis elegans] ref|NP_492311.2| Zip (yeast meiotic zipper) Homologous Protein family member (zhp-3) [Caenorhabditis elegans] 1.0E-157
blast CAE67109 Hypothetical protein CBG12523 [Caenorhabditis briggsae] 1.0E-106
blast CAE67109 Hypothetical protein CBG12523 [Caenorhabditis briggsae] 1.0E-75
blast XP_549701 PREDICTED: similar to CG31053-PA [Canis familiaris] 1.0E-12
Sequence
Target Sequence 
>C. ELEGANS:181852_AT
atggtctcaccgctaagcagtggacagtcagctaatgcaaacacgtcagaatcatcagct
ttcagtgtggccttcaataatatattcaccccatcgcgtaataatatgggagatagttcg
atgataaacaaaactacggcaaatcagacaatcatggacaaaactagtatgtcactggaa
aattggaggcaaaatagagcgaattcatttggagtgcatgatatttctaaaagagattct
tcgctgcccacaggaggcggttctgcgatacgtgttcatcatttcaaacagaattcacga
attactccaatagcacaaaatcgtcgaagtgcagctggattcgaccgtcagcagatacaa
gaaatgcgtcgaatctcatctcaacccggtctgtcattcactcttttattcctcaatttc
cctcgaccctctcatcaactaacacacttacacacttttttcgtctctcactctctcatt
ccgggcgctttttgcgcctttccgctccctctatattccaattctttcgatttttgccac
gtgtactctgacgttttcaggatacctcgcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTCTCACCGCTAAGCAGTGGAC 336 51 415 Antisense
CAGTCAGCTAATGCAAACACGTCAG 687 207 439 Antisense
AACACGTCAGAATCATCAGCTTTCA 47 137 454 Antisense
CAGCTTTCAGTGTGGCCTTCAATAA 503 193 470 Antisense
TATATTCACCCCATCGCGTAATAAT 256 661 495 Antisense
CAACTAACACACTTACACACTTTTT 218 189 850 Antisense
TCTCATTCCGGGCGCTTTTTGCGCC 655 611 888 Antisense
TCCCTCTATATTCCAATTCTTTCGA 619 597 920 Antisense
ATTCTTTCGATTTTTGCCACGTGTA 201 11 935 Antisense
TGCCACGTGTACTCTGACGTTTTCA 203 585 949 Antisense
GACGTTTTCAGGATACCTCGCACAA 234 367 964 Antisense
Sequence Source Affymetrix Proprietary Database