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[181851_at]

Description F56F4.4 /REP_DB=WormBase Gene ID /WP=CE11266 /TR=O01841 /GB=AAB54201.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 3.9
(-3)
A 		32
(1.1)
A 		5.3
(-2.8)
A 		45.5
(3)
A 		42
B 20.4
(1)
A 		28.6
(3)
A 		4.6
(-3)
A 		26.2
(2.4)
A 		24
C 3.1
(-2.8)
A 		3.6
(-2.7)
A 		1.8
(-3)
A 		40.9
(3)
A 		39
avr 9.1
(-2.1) 		21.4
(0.1) 		3.9
(-3) 		37.5
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 3.2
(-2.8)
A 		3.4
(-2.7)
A 		28.1
(3)
A 		2.3
(-3)
A 		5.6
(-2.2)
A 		3.9
(-2.6)
A 		26
B 4.9
(2.6)
A 		4.1
(1.2)
A 		4.1
(1.2)
A 		1.7
(-3)
A 		4.4
(1.8)
A 		5.1
(3)
A 		3
C 33.8
(3)
A 		6.1
(-2.4)
A 		9.3
(-1.8)
A 		2.9
(-3)
A 		4.3
(-2.7)
A 		3.3
(-2.9)
A 		31
avr 14
(3) 		4.5
(-1.9) 		13.8
(2.9) 		2.3
(-3) 		4.8
(-1.7) 		4.1
(-2.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-3)
A 		6.9
(3)
A 		1.4
(-3)
A 		6.7
(2.8)
A 		6
B 6.5
(2.4)
A 		7.1
(3)
A 		1.1
(-3)
A 		5.6
(1.5)
A 		6
C 1
(-2.6)
A 		1
(-2.6)
A 		0.6
(-3)
A 		6.9
(3)
A 		6
avr 3
(-0.8) 		5
(1.4) 		1
(-3) 		6.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.2
(-2.3)
A 		6.1
(3)
A 		0.6
(-3)
A 		1.7
(-1.8)
A 		1
(-2.6)
A 		6
B 1.7
(2.1)
A 		1.4
(0.9)
A 		1
(-0.9)
A 		0.5
(-3)
A 		1.8
(2.6)
A 		1.9
(3)
A 		1
C 12.5
(3)
A 		1.9
(-2.3)
A 		2.4
(-2.1)
A 		0.6
(-3)
A 		1.4
(-2.6)
A 		1.1
(-2.7)
A 		12
avr 4.9
(3) 		1.5
(-1.7) 		3.2
(0.6) 		0.6
(-3) 		1.6
(-1.6) 		1.3
(-2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181851_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1143
Sequence Type Exemplar sequence
Representative Public ID F56F4.4 NCBI
Target Description F56F4.4 /REP_DB=WormBase Gene ID /WP=CE11266 /TR=O01841 /GB=AAB54201.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059367 NCBI Caenorhabditis elegans F56F4.4 (F56F4.4) mRNA, complete cds. 11/11 None
F56F4.4 ENSEMBL cdna:known chromosome:CEL140:I:6146129:6147090:1 gene:F56F4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027758 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6146128-6147090(+) 97.38 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F4.4
Entrez Gene 186399 Entrez gene
SwissProt O01841 EMBL-EBI
WormBase CE11266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54201 Hypothetical protein F56F4.4 [Caenorhabditis elegans] ref|NP_491768.1| F56F4.4 [Caenorhabditis elegans] 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:181851_AT
gttcaaactcctgatattccacaataattattcacaaaaaagactggattgctacgattt
cgttcgaagtttcgatctaatgtattcagtttctcaattgaacttcaacaaaaataactc
aactctacaaatatatactgagaaaaaaccaaacgtcggagttcatttcaaaattcaaaa
aataggcaaagtttacgtccatcacctatgcaacttcaccgactttgcagtaaaatattt
gcattacaatacttcaaattttttgaaattacttcaaatttctacttttcccttattaaa
attaaattgttcattttccgtgaccgtaaacaatttccaaatggatcttccactctacgt
gatcgacgctgaaatcgacgaagcagtttggcaaggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAAACTCCTGATATTCCACAAT 247 445 72 Antisense
AGACTGGATTGCTACGATTTCGTTC 451 69 112 Antisense
GATCTAATGTATTCAGTTTCTCAAT 516 419 145 Antisense
CAAACGTCGGAGTTCATTTCAAAAT 113 193 221 Antisense
ATAGGCAAAGTTTACGTCCATCACC 615 1 253 Antisense
GCAACTTCACCGACTTTGCAGTAAA 230 319 281 Antisense
TAAATTGTTCATTTTCCGTGACCGT 703 641 374 Antisense
CGTGACCGTAAACAATTTCCAAATG 181 1 390 Antisense
AATGGATCTTCCACTCTACGTGATC 515 161 411 Antisense
TCCACTCTACGTGATCGACGCTGAA 525 587 420 Antisense
TCGACGAAGCAGTTTGGCAAGGATA 89 589 446 Antisense
Sequence Source Affymetrix Proprietary Database