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[181850_at]

Description C30B5.6 /REP_DB=WormBase Gene ID /WP=CE02525 /TR=Q18322 /GB=AAK31470.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 01      6grp_total > 08      4grp_total > 30      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 136.3
(2.4)
P 		89.6
(-0.7)
A 		56
(-3)
A 		145.5
(3)
P 		90
B 107.1
(3)
P 		49.4
(-3)
A 		61.4
(-1.8)
A 		69.5
(-0.9)
A 		58
C 101.3
(3)
P 		76.7
(0.6)
M 		40
(-3)
A 		96.2
(2.5)
P 		61
avr 114.9
(3) 		71.9
(-1.1) 		52.5
(-3) 		103.7
(1.9) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 238.7
(3)
P 		83.5
(-3)
P 		120.1
(-1.6)
P 		102.4
(-2.3)
P 		109
(-2)
P 		118.9
(-1.6)
P 		155
B 118.7
(-0.5)
P 		123.8
(0.1)
A 		116.8
(-0.7)
A 		149.7
(3)
P 		98.5
(-2.7)
P 		95.8
(-3)
P 		54
C 136.9
(3)
P 		100.2
(0.2)
P 		78.1
(-1.6)
A 		105.8
(0.6)
P 		74.8
(-1.8)
P 		59.5
(-3)
P 		77
avr 164.8
(3) 		102.5
(-2.1) 		105
(-1.9) 		119.3
(-0.7) 		94.1
(-2.8) 		91.4
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 49.6
(3)
P 		19.4
(-2.2)
A 		14.6
(-3)
A 		21.3
(-1.9)
P 		35
B 34.1
(3)
P 		12.2
(-3)
A 		14.2
(-2.5)
A 		14.8
(-2.3)
A 		22
C 33.5
(3)
P 		22.1
(-0.5)
M 		14
(-3)
A 		16.2
(-2.3)
P 		20
avr 39.1
(3) 		17.9
(-2.1) 		14.3
(-3) 		17.4
(-2.3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 44
(3)
P 		29.7
(-1.8)
P 		26.1
(-3)
P 		26
(-3)
P 		32.9
(-0.7)
P 		29
(-2)
P 		18
B 41.3
(3)
P 		41.2
(3)
A 		28.4
(-3)
A 		39.6
(2.2)
P 		40
(2.4)
P 		35.7
(0.4)
P 		13
C 50.7
(3)
P 		30.6
(-0.9)
P 		19.9
(-3)
A 		21.3
(-2.7)
P 		24.2
(-2.2)
P 		19.9
(-3)
P 		31
avr 45.3
(3) 		33.8
(-0.4) 		24.8
(-3) 		29
(-1.8) 		32.4
(-0.8) 		28.2
(-2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181850_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5903
Sequence Type Exemplar sequence
Representative Public ID C30B5.6 NCBI
Target Description C30B5.6 /REP_DB=WormBase Gene ID /WP=CE02525 /TR=Q18322 /GB=AAK31470.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062841
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062841 NCBI Caenorhabditis elegans C30B5.6 (C30B5.6) mRNA, complete cds. None
C30B5.6.2 ENSEMBL cdna:known chromosome:CEL140:II:6219475:6222381:-1 gene:C30B5.6 None
C30B5.6.1 ENSEMBL cdna:known chromosome:CEL140:II:6219475:6221663:-1 gene:C30B5.6 None
SNAP00000017622 ENSEMBL cdna:SNAP chromosome:CEL140:II:6219636:6222605:-1 None
GENEFINDER00000017624 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6218542:6222605:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6218703-6222602(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30B5.6
Entrez Gene 183042 Entrez gene
SwissProt Q18322 EMBL-EBI
WormBase CE32155 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15710 hypothetical protein C30B5.6 - Caenorhabditis elegans 0.0
blast CAE59266 Hypothetical protein CBG02597 [Caenorhabditis briggsae] 0.0
blast AAK31470 Hypothetical protein C30B5.6 [Caenorhabditis elegans] ref|NP_495242.3| C30B5.6 [Caenorhabditis elegans] 7.0E-68
blast T15710 hypothetical protein C30B5.6 - Caenorhabditis elegans 3.0E-67
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000017624 4 551-573,618-640,650-672,684-706
Sequence
Target Sequence 
>C. ELEGANS:181850_AT
gaagaacgttgcacaggcacttttagaatcagaagaagcttcgatgaggcaactcaaaaa
gacattgaggaaaataagagaagttgtgaaaattaagacatcttctacaacagctgatgt
aacaacaaccaataaacccaaaacagttaaacggtcttctcttgtctaccaaattctgtt
gagtcttcaaaagacactttccatcgtttattttcttgtaatttttatactttactttta
taaaggtgctattctcccgtatccaagatatgtccgagttatggagttttttgtaataat
tccctttattccaattgaatatttacgaataaattggggcagtcgcggaaatctgttgga
gagtactgcattccttgccttatctactgttttgtccatcccaataattataattctagt
ttatttggagttttttcaaaactatgttctgtttatcgaagaaatattcacctacgtcat
gggattcttcgtcatcctcgaaactctactttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAACGTTGCACAGGCACTTTTA 463 339 1467 Antisense
GAAGAAGCTTCGATGAGGCAACTCA 76 341 1498 Antisense
TTAAACGGTCTTCTCTTGTCTACCA 291 679 1613 Antisense
CAAAAGACACTTTCCATCGTTTATT 229 189 1654 Antisense
TATAAAGGTGCTATTCTCCCGTATC 471 657 1705 Antisense
GGGGCAGTCGCGGAAATCTGTTGGA 354 499 1802 Antisense
GTTGGAGAGTACTGCATTCCTTGCC 672 435 1821 Antisense
TGCCTTATCTACTGTTTTGTCCATC 239 585 1842 Antisense
AATATTCACCTACGTCATGGGATTC 363 173 1929 Antisense
TCATGGGATTCTTCGTCATCCTCGA 322 623 1943 Antisense
TCATCCTCGAAACTCTACTTTCTTT 595 621 1958 Antisense
Sequence Source Affymetrix Proprietary Database