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[181847_s_at]

Description C26D10.4 /REP_DB=WormBase Gene ID /WP=CE03027 /TR=Q18214 /GB=CAA91122.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 13      4grp_high_8_8 > 58      6grp_highest_nonorm > 70      6grp_total > 13      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 289.9
(2.5)
P 		206.6
(-0.1)
P 		306.3
(3)
P 		113.8
(-3)
A 		193
B 311.9
(2.9)
P 		243.8
(1)
P 		317
(3)
P 		102.2
(-3)
P 		215
C 330.3
(3)
P 		315
(2.6)
P 		263.7
(1.2)
P 		114.2
(-3)
P 		216
avr 310.7
(3) 		255.1
(1.3) 		295.7
(2.6) 		110.1
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 343.3
(2.7)
P 		356.8
(3)
P 		271.2
(1.1)
P 		213.3
(-0.1)
P 		211.4
(-0.2)
P 		82.6
(-3)
P 		274
B 360.7
(3)
P 		314.9
(1.9)
P 		248.2
(0.3)
P 		295.4
(1.4)
P 		187.7
(-1.2)
P 		112.3
(-3)
P 		248
C 391.7
(3)
P 		372.6
(2.6)
P 		291.7
(0.9)
P 		240.6
(-0.2)
P 		183.5
(-1.4)
P 		104.6
(-3)
P 		287
avr 365.2
(3) 		348.1
(2.6) 		270.4
(0.9) 		249.8
(0.4) 		194.2
(-0.9) 		99.8
(-3) 		265
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 105.6
(3)
P 		44.8
(-1.1)
P 		80.1
(1.3)
P 		16.7
(-3)
A 		89
B 99.5
(3)
P 		60.2
(-0)
P 		73.5
(1)
P 		21.8
(-3)
P 		78
C 109.4
(3)
P 		90.6
(1.7)
P 		91.9
(1.8)
P 		19.2
(-3)
P 		90
avr 104.8
(3) 		65.2
(0.2) 		81.8
(1.4) 		19.2
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 63.3
(-0.6)
P 		126.9
(3)
P 		59.1
(-0.8)
P 		54.1
(-1.1)
P 		63.8
(-0.5)
P 		20.1
(-3)
P 		107
B 125.5
(3)
P 		104.8
(1.5)
P 		60.3
(-1.7)
P 		78.2
(-0.4)
P 		76.2
(-0.5)
P 		41.9
(-3)
P 		84
C 145.2
(3)
P 		113.7
(1.3)
P 		74.3
(-0.9)
P 		48.4
(-2.3)
P 		59.4
(-1.7)
P 		35
(-3)
P 		110
avr 111.3
(2.7) 		115.1
(3) 		64.6
(-0.7) 		60.2
(-1) 		66.5
(-0.5) 		32.3
(-3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181847_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3622
Sequence Type Exemplar sequence
Representative Public ID C26D10.4 NCBI
Target Description C26D10.4 /REP_DB=WormBase Gene ID /WP=CE03027 /TR=Q18214 /GB=CAA91122.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026816(11), NM_001026817(11), NM_001026821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026816 NCBI Caenorhabditis elegans Epithelial Fusion Failure family member (eff-1) (eff-1) mRNA, complete cds. 11/11 None
NM_001026817 NCBI Caenorhabditis elegans Epithelial Fusion Failure family member (eff-1) (eff-1) mRNA, complete cds. 11/11 None
NM_001026821 NCBI Caenorhabditis elegans C26D10.7 (C26D10.7) mRNA, complete cds. 11/11 None
SNAP00000007138 ENSEMBL cdna:SNAP chromosome:CEL140:II:8334017:8336426:1 11/11 None
SNAP00000007139 ENSEMBL cdna:SNAP chromosome:CEL140:II:8346617:8348852:1 11/11 None
GENEFINDER00000007141 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8346617:8350117:1 11/11 None
GENEFINDER00000007143 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8329691:8337209:1 11/11 None
C26D10.7 ENSEMBL cdna:known chromosome:CEL140:II:8334017:8336426:1 gene:C26D10.7 11/11 A 
C26D10.5a ENSEMBL cdna:known chromosome:CEL140:II:8346613:8350472:1 gene:C26D10.5 11/11 A 
C26D10.5b ENSEMBL cdna:known chromosome:CEL140:II:8346617:8350472:1 gene:C26D10.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026819 2/11 Cross Hyb Matching Probes None
C26D10.5c 4/11 Cross Hyb Matching Probes None
C26D10.5d 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174334 4 2 NM_001026816 175006_at (11), 181806_at (11), 181847_s_at (11)
NM_001026817 175006_at (11), 181847_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8329199-8336423(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26D10.7
C26D10.5
Entrez Gene 3565188 Entrez gene
SwissProt Q6BEU7 EMBL-EBI
WormBase CE36985 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91123 Hypothetical protein C26D10.5a [Caenorhabditis elegans] ref|NP_001021987.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84282.1| EFF-1A precursor [Caenorhabditis elegans] 0.0
blast CAD36481 Hypothetical protein C26D10.5b [Caenorhabditis elegans] ref|NP_001021988.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84283.1| EFF-1B precursor [Caenorhabditis elegans] 0.0
blast CAE57697 Hypothetical protein CBG00700 [Caenorhabditis briggsae] 0.0
blast CAH04696 Hypothetical protein C26D10.7 [Caenorhabditis elegans] ref|NP_001021992.1| C26D10.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006204 EMBL-EBI GHMP kinase 1.2E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021987.1 1 562-584
NP_001021988.1 1 562-584
NP_001021992.1 1 560-582
C26D10.7 1 560-582
C26D10.5a 1 562-584
C26D10.5b 1 562-584
SNAP00000007138 1 560-582
SNAP00000007139 1 562-584
GENEFINDER00000007141 1 562-584
GENEFINDER00000007143 1 1470-1492
Sequence
Target Sequence 
>C. ELEGANS:181847_S_AT
aagtcaaaaccttgtcttcttccataatgcatcaagaattcgtgacttcagtggatccat
catcgttgattcaaaatcaaatccattgttcaacttgacagtatatgaggcttctggaaa
aattgatggatcagtgaagatgtcaactggatttggatctgatacaattcacacattcac
tgcttatgttagtgatcttcatgcttcaaaccgttctatgattattccactgccagcgat
tgttggacaaggagccagagcaatctgtctccaagcagattcaataactgacattgaaag
catttgccacgtcaccgagtttttcgagagccctttggaatttgattttattgaaggaaa
atggcacgaaatgattggaacctgcccaacttgtaatcaggtcaatttcaatggaatgaa
gaagtacctgaggccatctcagttcatcaatgcaatcatttcgcttggtgataatgttat
gcttgcagcagatcttgttgtgtatattggagttttgtgtattctgtatcttctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCAAAACCTTGTCTTCTTCCAT 325 157 3942 Antisense
ACCTTGTCTTCTTCCATAATGCATC 200 87 3950 Antisense
ATGCATCAAGAATTCGTGACTTCAG 538 41 3968 Antisense
GTGACTTCAGTGGATCCATCATCGT 43 483 3983 Antisense
GATACAATTCACACATTCACTGCTT 530 423 4102 Antisense
GCTTATGTTAGTGATCTTCATGCTT 197 305 4123 Antisense
TCTTCATGCTTCAAACCGTTCTATG 242 617 4137 Antisense
GTTCTATGATTATTCCACTGCCAGC 654 443 4154 Antisense
CAAGGAGCCAGAGCAATCTGTCTCC 418 183 4189 Antisense
GATTGGAACCTGCCCAACTTGTAAT 88 435 4314 Antisense
GTTTTGTGTATTCTGTATCTTCTTA 50 449 4453 Antisense
Sequence Source Affymetrix Proprietary Database