[Home] | [Total List]

[181846_at]

Description C26D10.4 /REP_DB=WormBase Gene ID /WP=CE03027 /TR=Q18214 /GB=CAA91122.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 36      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 18.3
(-1.5)
A 		57.6
(3)
A 		5.5
(-3)
A 		41
(1.1)
A 		52
B 10.1
(-0.1)
A 		19.1
(3)
A 		11
(0.2)
A 		1.6
(-3)
A 		18
C 47.5
(3)
A 		27.6
(0.4)
A 		1
(-3)
A 		9.1
(-2)
A 		47
avr 25.3
(1) 		34.8
(3) 		5.8
(-3) 		17.2
(-0.6) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 13.9
(-1.1)
A 		14.5
(-1)
A 		40.1
(3)
A 		2.5
(-2.9)
A 		7
(-2.2)
A 		2.1
(-3)
A 		38
B 44.9
(1.1)
A 		63.1
(3)
A 		52.8
(2)
A 		11.3
(-2.3)
A 		6.1
(-2.8)
A 		4.1
(-3)
A 		59
C 15.5
(-1.2)
A 		43.2
(3)
A 		35.7
(1.9)
A 		13.9
(-1.4)
A 		3.6
(-3)
A 		4.4
(-2.9)
A 		40
avr 24.8
(0.2) 		40.3
(2.6) 		42.9
(3) 		9.2
(-2.1) 		5.6
(-2.7) 		3.5
(-3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6.7
(-0.1)
A 		12.5
(3)
A 		1.4
(-3)
A 		6
(-0.5)
A 		11
B 3.2
(0.9)
A 		4.7
(3)
A 		2.6
(0.1)
A 		0.4
(-3)
A 		4
C 15.7
(3)
A 		7.9
(-0)
A 		0.3
(-3)
A 		1.5
(-2.5)
A 		15
avr 8.5
(3) 		8.4
(2.9) 		1.4
(-3) 		2.6
(-2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.6
(-1.5)
A 		5.2
(0.4)
A 		8.7
(3)
A 		0.6
(-2.9)
A 		2.1
(-1.8)
A 		0.5
(-3)
A 		8
B 15.6
(1.3)
A 		21
(3)
A 		12.8
(0.5)
A 		3
(-2.5)
A 		2.5
(-2.7)
A 		1.5
(-3)
A 		20
C 5.7
(-0.8)
A 		13.2
(3)
A 		9.1
(1)
A 		2.8
(-2.2)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		12
avr 8
(0.4) 		13.1
(3) 		10.2
(1.5) 		2.1
(-2.5) 		1.9
(-2.6) 		1.2
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181846_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3622
Sequence Type Exemplar sequence
Representative Public ID C26D10.4 NCBI
Target Description C26D10.4 /REP_DB=WormBase Gene ID /WP=CE03027 /TR=Q18214 /GB=CAA91122.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026821(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026821 NCBI Caenorhabditis elegans C26D10.7 (C26D10.7) mRNA, complete cds. 11/11 None
SNAP00000007138 ENSEMBL cdna:SNAP chromosome:CEL140:II:8334017:8336426:1 11/11 None
GENEFINDER00000007143 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8329691:8337209:1 11/11 None
C26D10.7 ENSEMBL cdna:known chromosome:CEL140:II:8334017:8336426:1 gene:C26D10.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8329199-8336423(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26D10.7
Entrez Gene 3565188 Entrez gene
SwissProt Q6BEU7 EMBL-EBI
WormBase CE36985 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAH04696 Hypothetical protein C26D10.7 [Caenorhabditis elegans] ref|NP_001021992.1| C26D10.7 [Caenorhabditis elegans] 0.0
blast CAD36481 Hypothetical protein C26D10.5b [Caenorhabditis elegans] ref|NP_001021988.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84283.1| EFF-1B precursor [Caenorhabditis elegans] 0.0
blast CAA91123 Hypothetical protein C26D10.5a [Caenorhabditis elegans] ref|NP_001021987.1| Epithelial Fusion Failure family member (eff-1) [Caenorhabditis elegans] gb|AAL84282.1| EFF-1A precursor [Caenorhabditis elegans] 0.0
blast CAA91122 Hypothetical protein C26D10.4 [Caenorhabditis elegans] ref|NP_495756.2| C26D10.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006204 EMBL-EBI GHMP kinase 1.2E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021992.1 1 560-582
C26D10.7 1 560-582
SNAP00000007138 1 560-582
GENEFINDER00000007143 1 1470-1492
Sequence
Target Sequence 
>C. ELEGANS:181846_AT
attccactgccagcgattgttggacaaggagccagagcaatctgtctccaagcagattca
ataactgacattgaaagcatttgccacgtcaccgagtttttcgagagccctttggaattt
gattttattgaaggaaaatggcacgaaatgattggaacctgcccaacttgtaatcaggtc
aatttcaatggaatgaagaagtacctgaggccatctcagttcatcaatgcaatcatttcg
cttggtgataatgttatgcttgcagcagatcttgttgtgtatattggagttttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCACTGCCAGCGATTGTTGGAC 672 7 4165 Antisense
GCCAGCGATTGTTGGACAAGGAGCC 198 279 4173 Antisense
GTCTCCAAGCAGATTCAATAACTGA 144 471 4208 Antisense
GACATTGAAAGCATTTGCCACGTCA 574 369 4231 Antisense
TGCCACGTCACCGAGTTTTTCGAGA 240 587 4246 Antisense
TGAAGAAGTACCTGAGGCCATCTCA 270 575 4358 Antisense
AGGCCATCTCAGTTCATCAATGCAA 559 53 4372 Antisense
ATCAATGCAATCATTTCGCTTGGTG 120 27 4387 Antisense
GGTGATAATGTTATGCTTGCAGCAG 623 499 4408 Antisense
GCTTGCAGCAGATCTTGTTGTGTAT 377 307 4422 Antisense
TTGTTGTGTATATTGGAGTTTTGTG 694 701 4436 Antisense
Sequence Source Affymetrix Proprietary Database