[Home] | [Total List]

[181845_at]

Description T10B5.3 /REP_DB=WormBase Gene ID /WP=CE28253 /TR=O76407 /GB=AAK68397.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 74      6grp_total > 69      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2318
1 2 3 4 range
A 805.6
(-2.8)
P 		817.9
(-2.8)
P 		744.9
(-3)
P 		3052.5
(3)
P 		2308
B 841.9
(-2.7)
P 		735.5
(-3)
P 		864.8
(-2.7)
P 		3029.2
(3)
P 		2294
C 938
(-2.3)
P 		898.6
(-2.4)
P 		734.8
(-3)
P 		2520.6
(3)
P 		1786
avr 861.8
(-2.8) 		817.3
(-2.9) 		781.5
(-3) 		2867.4
(3) 		2086

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 524
1 2 3 4 5 6 range
A 499.1
(-3)
P 		601.8
(-1.7)
P 		499.8
(-3)
P 		577.6
(-2)
P 		717.1
(-0.2)
P 		969.6
(3)
P 		471
B 607.4
(-2.7)
P 		624.1
(-2.2)
P 		597.4
(-3)
P 		743.4
(1.1)
P 		810.2
(3)
P 		774.6
(2)
P 		213
C 1023.5
(3)
P 		528
(-3)
P 		567
(-2.5)
P 		767.7
(-0.1)
P 		780.7
(0.1)
P 		851.9
(0.9)
P 		496
avr 710
(-0) 		584.6
(-2.4) 		554.7
(-3) 		696.2
(-0.3) 		769.3
(1.1) 		865.4
(3) 		311
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 468
1 2 3 4 range
A 293.3
(-0.4)
P 		177.5
(-3)
P 		194.7
(-2.6)
P 		446.8
(3)
P 		269
B 268.5
(-1.9)
P 		181.6
(-3)
P 		200.4
(-2.8)
P 		645.5
(3)
P 		464
C 310.5
(-1.1)
P 		258.4
(-2.9)
P 		256.1
(-3)
P 		425
(3)
P 		169
avr 290.8
(-1.3) 		205.8
(-3) 		217.1
(-2.8) 		505.8
(3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 92
(-3)
P 		214
(2.1)
P 		108.9
(-2.3)
P 		146.5
(-0.7)
P 		216.4
(2.2)
P 		236.1
(3)
P 		144
B 211.3
(-0.8)
P 		207.7
(-1)
P 		145.1
(-3)
P 		196.9
(-1.3)
P 		329.2
(3)
P 		288.9
(1.7)
P 		184
C 379.4
(3)
P 		161.1
(-2.6)
P 		144.3
(-3)
P 		154.4
(-2.7)
P 		252.6
(-0.2)
P 		285.2
(0.6)
P 		235
avr 227.6
(1.1) 		194.3
(-0.3) 		132.8
(-3) 		165.9
(-1.6) 		266.1
(2.8) 		270.1
(3) 		137
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181845_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15938
Sequence Type Exemplar sequence
Representative Public ID T10B5.3 NCBI
Target Description T10B5.3 /REP_DB=WormBase Gene ID /WP=CE28253 /TR=O76407 /GB=AAK68397.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071118(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071118 NCBI Caenorhabditis elegans T10B5.3 (T10B5.3) mRNA, complete cds. 11/11 None
SNAP00000014350 ENSEMBL cdna:SNAP chromosome:CEL140:V:1855373:1869601:-1 11/11 None
GENEFINDER00000014364 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1864310:1868389:-1 11/11 None
T10B5.3 ENSEMBL cdna:known chromosome:CEL140:V:1864009:1868395:-1 gene:T10B5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1867542-1868389(-) 99.73 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B5.3
Entrez Gene 178667 Entrez gene
SwissProt O76407 EMBL-EBI
WormBase CE30832 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:250418_AT transducin family protein / WD-40 repeat family protein at
CANINE:1583676_AT similar to WD-repeat protein 43 cfa
CANINE_2:CFA.12495.1.A1_AT similar to WD-repeat protein 43 cfa
CANINE_2:CFAAFFX.8836.1.S1_AT similar to WD-repeat protein 43 cfa
CANINE_2:CFAAFFX.8836.1.S1_S_AT similar to WD-repeat protein 43 cfa
DROSOPHILA_2:1633003_AT dm
DROSGENOME1:146844_AT dm
DROSGENOME1:146843_AT dm
CHICKEN:GGAAFFX.13237.1.S1_S_AT WD repeat domain 43 gga
HU35KSUBA:RC_D60354_S_AT WD repeat domain 43 hs
HU35KSUBB:RC_AA044399_S_AT WD repeat domain 43 hs
HU35KSUBC:RC_AA460557_AT WD repeat domain 43 hs
HUGENEFL:D87716_S_AT WD repeat domain 43 hs
HG-U133_PLUS_2:214662_AT WD repeat domain 43 hs
HG-U133A_2:214662_AT WD repeat domain 43 hs
HG-U133A:214662_AT WD repeat domain 43 hs
U133_X3P:214662_3P_AT WD repeat domain 43 hs
HG-U95AV2:38250_AT WD repeat domain 43 hs
HG-U95B:43792_AT WD repeat domain 43 hs
HG-U133_PLUS_2:241543_AT WD repeat domain 43 hs
HG-U133B:241543_AT WD repeat domain 43 hs
HG-U95E:67301_AT WD repeat domain 43 hs
HG-U95D:67473_AT WD repeat domain 43 hs
U133_X3P:HS.169863.0.A1_3P_AT WD repeat domain 43 hs
MG-U74AV2:98973_AT WD repeat domain 43 mm
MG-U74AV2:102385_AT WD repeat domain 43 mm
MU11KSUBA:AA275330_S_AT WD repeat domain 43 mm
MOE430A:1428390_AT WD repeat domain 43 mm
MOUSE430A_2:1428390_AT WD repeat domain 43 mm
MOUSE430_2:1428390_AT WD repeat domain 43 mm
MOE430A:1428389_S_AT WD repeat domain 43 mm
MOUSE430A_2:1428389_S_AT WD repeat domain 43 mm
MOUSE430_2:1428389_S_AT WD repeat domain 43 mm
MU19KSUBB:TC28645_AT WD repeat domain 43 mm
MG-U74CV2:169900_AT PREDICTED: WD repeat domain 43 [Mus musculus], mRNA sequence mm
RG-U34B:RC_AA955298_AT similar to WD-repeat protein 43 rn
RAE230A:1388709_AT similar to WD-repeat protein 43 rn
RAT230_2:1388709_AT similar to WD-repeat protein 43 rn
RAE230B:1382679_AT similar to WD-repeat protein 43 rn
RAT230_2:1382679_AT similar to WD-repeat protein 43 rn
RG-U34B:RC_AI030580_AT Similar to WD-repeat protein 43 rn
YEAST_2:1773397_AT Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA Sc
Protein Similarities
Method ID Description E-Value
blast AAK68397 Hypothetical protein T10B5.3 [Caenorhabditis elegans] ref|NP_503519.2| T10B5.3 [Caenorhabditis elegans] 1.0E-119
blast AAK68397 Hypothetical protein T10B5.3 [Caenorhabditis elegans] ref|NP_503519.2| T10B5.3 [Caenorhabditis elegans] 1.0E-118
blast T33230 hypothetical protein T10B5.3 - Caenorhabditis elegans 1.0E-111
blast AAK68397 Hypothetical protein T10B5.3 [Caenorhabditis elegans] ref|NP_503519.2| T10B5.3 [Caenorhabditis elegans] 1.0E-111
blast CAE74142 Hypothetical protein CBG21813 [Caenorhabditis briggsae] 2.0E-95
Sequence
Target Sequence 
>C. ELEGANS:181845_AT
ggccaacaaaccgctcggagatcgtgaaaaagagccagccacgccaacttctgaactcaa
aaagggaaaaacgagtggtagcggcggtggatcacaatgtgttctgcttactcagggaat
aatggctaatgatagtgcaaaaatcgactcagtcattagaaatttgaattctgaaattat
tcacgctaccctccgtgatctccagccgatgcaggtcttgccattgctcaaaatcatcga
atctcgcttgaaaacgaggaatgctgcagacattcgtccaaccatccgatgggctcaaat
cgccttctcaattcacatgccttatctcagctcacttccgaatttggagaaggaaattgg
cggtttaatcggctggctgcgctcaagagtcggtcatcatcgagatttgttggctcttca
cggaaaaatatccacaatcgctgatcttatcaagagacgaactaataatgtggttattgt
gcagcagccgttggttgtgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCAACAAACCGCTCGGAGATCGT 153 543 165 Antisense
ATCACAATGTGTTCTGCTTACTCAG 624 27 255 Antisense
ATGCAGGTCTTGCCATTGCTCAAAA 679 43 373 Antisense
ATGCTGCAGACATTCGTCCAACCAT 98 43 425 Antisense
CCATCCGATGGGCTCAAATCGCCTT 382 255 446 Antisense
CAATTCACATGCCTTATCTCAGCTC 169 181 473 Antisense
ATCTCAGCTCACTTCCGAATTTGGA 137 33 488 Antisense
AAATTGGCGGTTTAATCGGCTGGCT 309 115 518 Antisense
GCGCTCAAGAGTCGGTCATCATCGA 556 287 543 Antisense
TCGAGATTTGTTGGCTCTTCACGGA 424 601 564 Antisense
GTGCAGCAGCCGTTGGTTGTGTTCA 416 481 643 Antisense
Sequence Source Affymetrix Proprietary Database