[Home] | [Total List]

[181844_at]

Description Y45F3A.4 /REP_DB=WormBase Gene ID /WP=CE19167 /TR=Q9XWZ1 /GB=CAA21491.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 01      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_total > 24      4grp_total > 54      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 106.9
(0)
P 		103.9
(-0.4)
P 		126
(3)
P 		87.2
(-3)
P 		39
B 108.2
(1.3)
P 		117.3
(3)
P 		97.2
(-0.7)
P 		84.7
(-3)
P 		33
C 168.6
(3)
P 		117.4
(-2.7)
P 		114.4
(-3)
P 		124.1
(-1.9)
P 		54
avr 127.9
(3) 		112.9
(-0.1) 		112.5
(-0.2) 		98.7
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 121.8
(3)
P 		89.1
(0.4)
P 		78.9
(-0.5)
P 		62.9
(-1.8)
A 		47.6
(-3)
P 		52.7
(-2.6)
A 		74
B 137.1
(3)
P 		109.7
(1.5)
P 		88.1
(0.3)
P 		82.9
(0)
P 		50.2
(-1.8)
P 		28.2
(-3)
P 		109
C 146.7
(3)
P 		107.9
(1)
P 		101.6
(0.7)
M 		44.7
(-2.2)
A 		30
(-3)
A 		34.8
(-2.8)
M 		117
avr 135.2
(3) 		102.2
(1) 		89.5
(0.2) 		63.5
(-1.5) 		42.6
(-2.8) 		38.6
(-3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 38.9
(3)
P 		22.6
(-0.7)
P 		32.9
(1.6)
P 		12.8
(-3)
P 		26
B 34.5
(3)
P 		29
(1)
P 		22.5
(-1.4)
P 		18.1
(-3)
P 		16
C 55.8
(3)
P 		33.7
(-0.8)
P 		39.9
(0.3)
P 		20.9
(-3)
P 		35
avr 43.1
(3) 		28.4
(-0.4) 		31.8
(0.4) 		17.3
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 22.5
(0.1)
P 		31.7
(3)
P 		17.2
(-1.6)
P 		15.9
(-2)
A 		14.4
(-2.5)
P 		12.8
(-3)
A 		19
B 47.7
(3)
P 		36.5
(1.2)
P 		21.4
(-1.2)
P 		22
(-1.1)
P 		20.4
(-1.4)
P 		10.5
(-3)
P 		37
C 54.4
(3)
P 		32.9
(0.2)
P 		25.8
(-0.8)
M 		9
(-3)
A 		9.7
(-2.9)
A 		11.6
(-2.7)
M 		45
avr 41.5
(3) 		33.7
(1.4) 		21.5
(-1) 		15.6
(-2.2) 		14.8
(-2.4) 		11.6
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6000
Sequence Type Exemplar sequence
Representative Public ID Y45F3A.4 NCBI
Target Description Y45F3A.4 /REP_DB=WormBase Gene ID /WP=CE19167 /TR=Q9XWZ1 /GB=CAA21491.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066929(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066929 NCBI Caenorhabditis elegans Y45F3A.4 (Y45F3A.4) mRNA, complete cds. 10/11 None
GENEFINDER00000002989 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10572665:10575247:-1 11/11 None
Y45F3A.4 ENSEMBL cdna:known chromosome:CEL140:III:10572352:10575297:-1 gene:Y45F3A.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002980 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10572660-10575243(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F3A.4
Entrez Gene 189908 Entrez gene
SwissProt Q9XWZ1 EMBL-EBI
WormBase CE33226 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21491 Hypothetical protein Y45F3A.4 [Caenorhabditis elegans] ref|NP_499330.2| Y45F3A.4 [Caenorhabditis elegans] 2.0E-64
blast CAE71444 Hypothetical protein CBG18355 [Caenorhabditis briggsae] 1.0E-58
blast CAA21491 Hypothetical protein Y45F3A.4 [Caenorhabditis elegans] ref|NP_499330.2| Y45F3A.4 [Caenorhabditis elegans] 6.0E-55
blast CAE71444 Hypothetical protein CBG18355 [Caenorhabditis briggsae] 3.0E-49
Sequence
Target Sequence 
>C. ELEGANS:181844_AT
gaattgtcttctggtactttctgccgttctccttctcactacagtttcccacgtggcagc
cgttcgttgtaaatgcacaaaagagtccgaaacggtgacgtgtacagatggtgtgtgcga
aactgaaaatggatcatgtcttatgctggatcatccatcgatgggaattcattacacatg
tcacacgaggggtttgaaagacggaagctgtcataaccgacttactttctcgattattca
aggtgcggacttaaaaaaatgtattccaaaatttaattatcggctattttatccaattga
tctttttttttctatttttcgattttattgcacattgctcagaaagagcaaaaactcggt
cacagaaacctcaaaaagcggagtctcggtgaaaatttgcggttgtaacgctccggactt
ttgcaatttctccatgtggccagacaaatcagctcatcaccatcacaaacaccatcacaa
gcatcatgacgaagctcaggaagaatcaattaattcagtttcccgatattctactatttt
ctcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGTCTTCTGGTACTTTCTGCC 691 323 24 Antisense
CCACGTGGCAGCCGTTCGTTGTAAA 264 275 72 Antisense
TCATGTCTTATGCTGGATCATCCAT 169 623 157 Antisense
GGGAATTCATTACACATGTCACACG 49 495 186 Antisense
GTCATAACCGACTTACTTTCTCGAT 409 465 233 Antisense
ATTTGCGGTTGTAACGCTCCGGACT 315 17 418 Antisense
TAACGCTCCGGACTTTTGCAATTTC 475 629 429 Antisense
TGCAATTTCTCCATGTGGCCAGACA 16 577 445 Antisense
TGGCCAGACAAATCAGCTCATCACC 40 545 460 Antisense
ATCACAAACACCATCACAAGCATCA 413 25 485 Antisense
CCCGATATTCTACTATTTTCTCCTT 229 261 545 Antisense
Sequence Source Affymetrix Proprietary Database