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[181843_s_at]

Description K10D2.1 /REP_DB=WormBase Gene ID /WP=CE02013 /TR=Q09589 /GB=AAA62539.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_high_8_8 > 56      6grp_highest_nonorm > 90      6grp_total > 98      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 135.8
(3)
P 		62.3
(-3)
P 		115.4
(1.3)
P 		101.8
(0.2)
A 		74
B 118.3
(3)
P 		93.5
(-2.8)
P 		92.8
(-3)
P 		110.1
(1.1)
P 		26
C 124.8
(3)
P 		120.1
(2.3)
P 		114.9
(1.6)
P 		83
(-3)
P 		42
avr 126.3
(3) 		92
(-3) 		107.7
(-0.3) 		98.3
(-1.9) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 158.6
(0.9)
P 		113.1
(-2.2)
P 		159.2
(0.9)
P 		101.3
(-3)
P 		189.8
(3)
P 		143.9
(-0.1)
P 		89
B 158.2
(0.9)
P 		128.2
(-1.2)
P 		144.7
(-0)
P 		103.9
(-3)
P 		156.5
(0.8)
P 		186.6
(3)
P 		83
C 137.6
(-0.4)
P 		119.8
(-1.2)
P 		81.9
(-3)
P 		211
(3)
P 		152.2
(0.3)
P 		191.7
(2.1)
P 		129
avr 151.5
(0.5) 		120.4
(-3) 		128.6
(-2.1) 		138.7
(-1) 		166.2
(2.1) 		174.1
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 49.5
(3)
P 		13.5
(-3)
P 		30.2
(-0.2)
P 		14.9
(-2.8)
A 		36
B 37.7
(3)
P 		23.1
(-2.4)
P 		21.5
(-3)
P 		23.5
(-2.3)
P 		16
C 41.3
(3)
P 		34.5
(1.5)
P 		40.1
(2.7)
P 		14
(-3)
P 		27
avr 42.8
(3) 		23.7
(-1.5) 		30.6
(0.1) 		17.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 29.2
(-2.3)
P 		40.2
(-0.2)
P 		34.7
(-1.3)
P 		25.7
(-3)
P 		57.3
(3)
P 		35
(-1.2)
P 		32
B 55
(0.9)
P 		42.7
(-0.8)
P 		35.1
(-1.9)
P 		27.5
(-3)
P 		63.6
(2.1)
P 		69.6
(3)
P 		42
C 51
(1.2)
P 		36.6
(-0.8)
P 		20.8
(-3)
P 		42.4
(-0)
P 		49.3
(0.9)
P 		64.2
(3)
P 		43
avr 45.1
(0.4) 		39.8
(-0.8) 		30.2
(-3) 		31.9
(-2.6) 		56.7
(3) 		56.3
(2.9) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181843_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6570
Sequence Type Exemplar sequence
Representative Public ID K10D2.1 NCBI
Target Description K10D2.1 /REP_DB=WormBase Gene ID /WP=CE02013 /TR=Q09589 /GB=AAA62539.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065700 NCBI Caenorhabditis elegans K10D2.1a (K10D2.1) mRNA, complete cds. 11/11 None
SNAP00000029360 ENSEMBL cdna:SNAP chromosome:CEL140:III:5191088:5195767:1 11/11 None
GENEFINDER00000029363 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5191088:5196292:1 11/11 None
K10D2.1a ENSEMBL cdna:known chromosome:CEL140:III:5188694:5195985:1 gene:K10D2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175709 2 1 NM_065700 181843_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5188692-5195766(+) 99.78 100.0
Public Domain and Genome References
Ensembl K10D2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62539 Hypothetical protein K10D2.1a [Caenorhabditis elegans] ref|NP_498101.1| K10D2.1a [Caenorhabditis elegans] 0.0
blast AAN65314 Hypothetical protein K10D2.1b [Caenorhabditis elegans] ref|NP_871692.1| K10D2.1b [Caenorhabditis elegans] 0.0
blast CAE60033 Hypothetical protein CBG03541 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.95
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.8E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0037
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0074
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.094
Pfam IPR003749 EMBL-EBI ThiamineS 1.3E-7
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.015
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.017
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.27
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.69
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.41
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.083
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.95
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.8E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0037
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0074
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.094
Sequence
Target Sequence 
>C. ELEGANS:181843_S_AT
gtaacacgacaaccgctatttgattgtgttgaagcttcaactgacaattcgttgattagt
gcagatgtatctgaaactggagttccattgatagttttctcgaatggatccatttttaca
ttcaatgtttcactttcgtgttggattcaagcaataactacaaatgtacttggacgttta
acatctccaatatcagatgctcaattatcatgttcaaatggaacaacgaattccgccgga
ccactggtcagattgttgaaacggatgagaaaacaagcaacagctccaggagttgcacca
caagtagttaaagctgttaaagaatctcaacttgaacagcttcttcattgtgcagaacaa
cttggaaatccacaagactatcagacaatgctaatgttatatgtcgagacattatgtgaa
ggaggaagtgaaaagaagctcaaaaatatactgaatgatctatcgagaagtggagcacca
atgcaagtatgtggactccgtcgttcggctctctatgatgacgtcactcgaatgattaag
ctaaagcagccagctattgcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACACGACAACCGCTATTTGATT 70 461 3070 Antisense
GAGTTCCATTGATAGTTTTCTCGAA 55 399 3149 Antisense
ACATTCAATGTTTCACTTTCGTGTT 281 105 3187 Antisense
GGACGTTTAACATCTCCAATATCAG 417 523 3241 Antisense
TCCGCCGGACCACTGGTCAGATTGT 387 595 3301 Antisense
GAACAGCTTCTTCATTGTGCAGAAC 415 351 3403 Antisense
GGAAATCCACAAGACTATCAGACAA 578 527 3433 Antisense
GATCTATCGAGAAGTGGAGCACCAA 65 419 3526 Antisense
GCAAGTATGTGGACTCCGTCGTTCG 275 321 3552 Antisense
TTCGGCTCTCTATGATGACGTCACT 296 693 3573 Antisense
GCTAAAGCAGCCAGCTATTGCAGCA 544 301 3609 Antisense
Sequence Source Affymetrix Proprietary Database