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[181841_at]

Description C18G1.3 /REP_DB=WormBase Gene ID /WP=CE17419 /TR=O61921 /GB=AAC17758.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 5.5
(-3)
A 		6.6
(-1.7)
A 		10.7
(3)
A 		10.1
(2.3)
A 		5
B 4.3
(-2.6)
A 		2.4
(-3)
A 		29.3
(3)
A 		9.3
(-1.5)
A 		27
C 5.5
(-2.5)
A 		10.3
(-1.8)
A 		1.4
(-3)
A 		46.7
(3)
A 		45
avr 5.1
(-3) 		6.4
(-2.5) 		13.8
(0.1) 		22
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 8.8
(-1.6)
A 		3.2
(-2.9)
A 		28.9
(3)
A 		2.7
(-3)
A 		13.6
(-0.5)
A 		2.9
(-3)
A 		26
B 4.5
(-3)
A 		5
(-2.5)
A 		9.7
(1.8)
A 		11
(3)
A 		6.9
(-0.8)
A 		9.2
(1.3)
A 		7
C 1.4
(-3)
A 		24.4
(3)
A 		2.1
(-2.8)
A 		9.1
(-1)
A 		13
(0)
A 		6.5
(-1.7)
A 		23
avr 4.9
(-3) 		10.9
(1.1) 		13.6
(3) 		7.6
(-1.1) 		11.2
(1.3) 		6.2
(-2.1) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2
(-0.4)
A 		1.4
(-3)
A 		2.8
(3)
A 		1.5
(-2.6)
A 		1
B 1.4
(-2.2)
A 		0.6
(-3)
A 		6.8
(3)
A 		2
(-1.6)
A 		6
C 1.8
(-1.9)
A 		2.9
(-1.1)
A 		0.5
(-3)
A 		7.9
(3)
A 		7
avr 1.7
(-2.7) 		1.6
(-3) 		3.4
(1.9) 		3.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.6
(-2)
A 		1.1
(-2.6)
A 		6.3
(3)
A 		0.7
(-3)
A 		4.1
(0.6)
A 		0.7
(-3)
A 		6
B 1.6
(-3)
A 		1.7
(-2.7)
A 		2.4
(-0.3)
A 		2.9
(1.3)
A 		2.8
(1)
A 		3.4
(3)
A 		2
C 0.5
(-3)
A 		7.4
(3)
A 		0.5
(-3)
A 		1.8
(-1.9)
A 		4.2
(0.2)
A 		2.2
(-1.5)
A 		7
avr 1.2
(-3) 		3.4
(2.3) 		3.1
(1.6) 		1.8
(-1.6) 		3.7
(3) 		2.1
(-0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181841_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15668
Sequence Type Exemplar sequence
Representative Public ID C18G1.3 NCBI
Target Description C18G1.3 /REP_DB=WormBase Gene ID /WP=CE17419 /TR=O61921 /GB=AAC17758.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071879(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071879 NCBI Caenorhabditis elegans C18G1.3 (C18G1.3) mRNA, complete cds. 11/11 None
C18G1.3 ENSEMBL cdna:known chromosome:CEL140:V:4761341:4763944:1 gene:C18G1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018229 6/11 Cross Hyb Matching Probes None
GENEFINDER00000018234 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4761340-4763944(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18G1.3
Entrez Gene 182795 Entrez gene
SwissProt O61921 EMBL-EBI
WormBase CE17419 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17758 Hypothetical protein C18G1.3 [Caenorhabditis elegans] ref|NP_504280.1| C18G1.3 [Caenorhabditis elegans] 0.0
blast CAE17897 Hypothetical protein K08H2.9 [Caenorhabditis elegans] ref|NP_001024774.1| K08H2.9 [Caenorhabditis elegans] 1.0E-153
blast CAE61403 Hypothetical protein CBG05262 [Caenorhabditis briggsae] 1.0E-142
Sequence
Target Sequence 
>C. ELEGANS:181841_AT
acaataccccacaaccatatagaattgaaaaatgcaattgaaaataaacaagtcttccaa
tttcatcacagatttttctttgctgggcataaaatttcaaatatttcacactggtttgcg
gtttccaatgaaaccgacgaaattactgcttgggaaataccttactcgagcagcttatgg
gaagttcaagtgattcttcatcgtaacgacttgtacaatgcggattactttccagcgaga
atcaaggttatgcagtcattggtgtacagcctgtgcagagccaactatacgttcaacctc
ctatcacacgttttcaacgtgcacaaaggaatcaaattaggcgatactaacttctcaaaa
tccgttatagcacactctaagagaaatggaagaaatagcgaactccaggatacataccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATACCCCACAACCATATAGAAT 252 115 583 Antisense
ATCACAGATTTTTCTTTGCTGGGCA 478 27 647 Antisense
TATTTCACACTGGTTTGCGGTTTCC 386 661 684 Antisense
GGAAATACCTTACTCGAGCAGCTTA 200 527 735 Antisense
ATGCGGATTACTTTCCAGCGAGAAT 231 41 800 Antisense
GCAGTCATTGGTGTACAGCCTGTGC 94 313 834 Antisense
CAGCCTGTGCAGAGCCAACTATACG 250 203 849 Antisense
CAACTATACGTTCAACCTCCTATCA 152 187 864 Antisense
ACCTCCTATCACACGTTTTCAACGT 697 81 878 Antisense
TCAAAATCCGTTATAGCACACTCTA 222 629 937 Antisense
TAGCGAACTCCAGGATACATACCCA 679 649 978 Antisense
Sequence Source Affymetrix Proprietary Database