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[181840_s_at]

Description C35C5.3A /REP_DB=WormBase Gene ID /WP=CE03066 /TR=Q93327 /GB=CAB01684.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 35      6grp_total > 51      4grp_total > 57      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 787
1 2 3 4 range
A 2531.6
(-3)
P 		3114.4
(2.2)
P 		3207.8
(3)
P 		2668.9
(-1.8)
P 		676
B 2751.7
(-1.7)
P 		3101.5
(1.2)
P 		3318.3
(3)
P 		2598.5
(-3)
P 		720
C 2696.5
(-2)
P 		2972.6
(2.1)
P 		3035
(3)
P 		2630.5
(-3)
P 		405
avr 2659.9
(-2.7) 		3062.8
(1.7) 		3187
(3) 		2632.6
(-3) 		554

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2183
1 2 3 4 5 6 range
A 3135.1
(1.1)
P 		2840.9
(-0)
P 		3620.5
(3)
P 		3159.8
(1.2)
P 		2602.5
(-0.9)
P 		2072.6
(-3)
P 		1548
B 2770.3
(-1.6)
P 		2704.1
(-1.8)
P 		4255.4
(3)
P 		3635.7
(1.1)
P 		2513.9
(-2.4)
P 		2303.9
(-3)
P 		1952
C 2398.9
(-2.2)
P 		2959.5
(0.2)
P 		3322.9
(1.8)
P 		3616.7
(3)
P 		2201.6
(-3)
P 		2379.2
(-2.2)
P 		1415
avr 2768.1
(-0.9) 		2834.8
(-0.6) 		3732.9
(3) 		3470.7
(1.9) 		2439.3
(-2.2) 		2251.9
(-3) 		1481
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 667
1 2 3 4 range
A 921.8
(3)
P 		676.1
(0.2)
P 		838.6
(2.1)
P 		390.7
(-3)
P 		531
B 877.5
(3)
P 		766
(0.9)
P 		768.9
(1)
P 		553.7
(-3)
P 		324
C 892.6
(1.4)
P 		854.6
(1)
P 		1057.8
(3)
P 		443.5
(-3)
P 		614
avr 897.3
(3) 		765.6
(1.2) 		888.4
(2.9) 		462.6
(-3) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 577.9
(-2.1)
P 		1010.4
(3)
P 		788.5
(0.4)
P 		801.4
(0.5)
P 		785.3
(0.3)
P 		504.6
(-3)
P 		506
B 963.9
(0.6)
P 		900.1
(-1.6)
P 		1033.3
(3)
P 		963
(0.6)
P 		1021.4
(2.6)
P 		859.1
(-3)
P 		174
C 889.2
(2.6)
P 		903
(3)
P 		845.7
(1.2)
P 		727.3
(-2.5)
P 		712.4
(-3)
P 		796.5
(-0.4)
P 		191
avr 810.3
(-0.5) 		937.8
(3) 		889.2
(1.7) 		830.6
(0) 		839.7
(0.3) 		720.1
(-3) 		218
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181840_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17096
Sequence Type Exemplar sequence
Representative Public ID C35C5.3A NCBI
Target Description C35C5.3A /REP_DB=WormBase Gene ID /WP=CE03066 /TR=Q93327 /GB=CAB01684.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077528(11), NM_077529(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077528 NCBI Caenorhabditis elegans C35C5.3b (C35C5.3) mRNA, complete cds. 11/11 None
NM_077529 NCBI Caenorhabditis elegans C35C5.3a (C35C5.3) mRNA, complete cds. 11/11 None
SNAP00000005107 ENSEMBL cdna:SNAP chromosome:CEL140:X:11545331:11546416:-1 11/11 None
GENEFINDER00000005114 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11545331:11546416:-1 11/11 None
C35C5.3b ENSEMBL cdna:known chromosome:CEL140:X:11545037:11547484:-1 gene:C35C5.3 11/11 A 
C35C5.3a ENSEMBL cdna:known chromosome:CEL140:X:11545331:11547484:-1 gene:C35C5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11545330-11547484(-) 100.0 100.0
Public Domain and Genome References
Ensembl C35C5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01692 Hypothetical protein C35C5.3b [Caenorhabditis elegans] ref|NP_509929.1| C35C5.3b [Caenorhabditis elegans] pir||T19755 hypothetical protein C35C5.3b - Caenorhabditis elegans 1.0E-147
blast CAB01684 Hypothetical protein C35C5.3a [Caenorhabditis elegans] ref|NP_509930.1| C35C5.3a [Caenorhabditis elegans] pir||T19747 hypothetical protein C35C5.3a - Caenorhabditis elegans 1.0E-146
blast CAB01684 Hypothetical protein C35C5.3a [Caenorhabditis elegans] ref|NP_509930.1| C35C5.3a [Caenorhabditis elegans] pir||T19747 hypothetical protein C35C5.3a - Caenorhabditis elegans 1.0E-144
blast CAB01692 Hypothetical protein C35C5.3b [Caenorhabditis elegans] ref|NP_509929.1| C35C5.3b [Caenorhabditis elegans] pir||T19755 hypothetical protein C35C5.3b - Caenorhabditis elegans 1.0E-144
blast Q9U3N5 Putative selT-like protein C35C5.3 precursor 1.0E-140
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509929.1 2 13-35,140-162
NP_509930.1 2 12-34,137-159
C35C5.3b 2 13-35,140-162
C35C5.3a 2 12-34,137-159
Sequence
Target Sequence 
>C. ELEGANS:181840_S_AT
aagtccgggagcaatcctcatttgttaagcctacagccgtccaccacgccaaggatcttc
caacattgagaattttctactgtgtttcatgtggttataagcaagctttcgaccagttca
ccacttttgccaaagaaaagtatccaaatatgccaattgaaggagccaactttgcaccgg
ttctttggaaagcttatgttgctcaggctctcagtttcgtcaaaatggcagttctcgtgc
tggtgctaggtggaataaatccatttgagagatttggtcttggatacccacagattctgc
agcacgcacacggaaacaagatgtcgtcctgtatgctggtgttcatgctcggcaaccttg
ttgaacaaagtctcatttctactggagcattcgaagtttaccttggcaatgaacaaatct
ggagtaaaatcgagtcaggtcgtgtaccatcccctcaggaattcatgcaacttatcgatg
ctcaacttgcggtgctcggaaaagctcctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCCGGGAGCAATCCTCATTTGT 469 157 230 Antisense
ATAAGCAAGCTTTCGACCAGTTCAC 449 25 326 Antisense
TTGAAGGAGCCAACTTTGCACCGGT 638 683 386 Antisense
GAAAGCTTATGTTGCTCAGGCTCTC 456 359 417 Antisense
AAAATGGCAGTTCTCGTGCTGGTGC 420 133 451 Antisense
GGTCTTGGATACCCACAGATTCTGC 440 503 505 Antisense
CAAGATGTCGTCCTGTATGCTGGTG 173 185 546 Antisense
TATGCTGGTGTTCATGCTCGGCAAC 284 657 561 Antisense
AATCGAGTCAGGTCGTGTACCATCC 647 167 657 Antisense
GTACCATCCCCTCAGGAATTCATGC 672 451 673 Antisense
TGCGGTGCTCGGAAAAGCTCCTGTC 163 583 717 Antisense
Sequence Source Affymetrix Proprietary Database