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[181839_at]

Description ZC487.3 /REP_DB=WormBase Gene ID /WP=CE26335 /TR=Q23350 /GB=AAA92539.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 0.8
(-3)
A 		18.9
(-1)
A 		1.5
(-2.9)
A 		55.5
(3)
P 		55
B 24.1
(3)
A 		14.3
(0.2)
A 		3.1
(-3)
A 		17.2
(1)
M 		21
C 1.8
(-3)
A 		28.8
(1.1)
A 		2.1
(-3)
A 		41.7
(3)
A 		40
avr 8.9
(-1.9) 		20.7
(0.1) 		2.2
(-3) 		38.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 6.3
(-1.5)
A 		1.8
(-3)
A 		16.6
(1.9)
A 		2.5
(-2.8)
A 		19.9
(3)
A 		16.6
(1.9)
A 		18
B 3.3
(-2)
A 		9.2
(3)
A 		6.4
(0.6)
A 		6.4
(0.6)
A 		6.9
(1.1)
A 		2.1
(-3)
A 		7
C 1.4
(-2.9)
A 		26.4
(3)
A 		5.3
(-1.9)
A 		1.7
(-2.8)
A 		0.8
(-3)
A 		6.5
(-1.7)
A 		26
avr 3.7
(-2.9) 		12.5
(3) 		9.4
(0.9) 		3.5
(-3) 		9.2
(0.8) 		8.4
(0.3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.3
(-3)
A 		4.1
(-0.1)
A 		0.4
(-2.9)
A 		8.1
(3)
P 		8
B 7.7
(3)
A 		3.5
(-0.6)
A 		0.7
(-3)
A 		3.7
(-0.4)
M 		7
C 0.6
(-3)
A 		8.3
(3)
A 		0.7
(-2.9)
A 		7
(2)
A 		8
avr 2.9
(-0.6) 		5.3
(1.9) 		0.6
(-3) 		6.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.2
(-2.3)
A 		0.7
(-2.9)
A 		3.6
(0.3)
A 		0.6
(-3)
A 		6
(3)
A 		4
(0.8)
A 		5
B 1.2
(-2)
A 		3.1
(3)
A 		1.6
(-0.9)
A 		1.7
(-0.7)
A 		2.8
(2.2)
A 		0.8
(-3)
A 		2
C 0.5
(-2.8)
A 		8.1
(3)
A 		1.4
(-2.2)
A 		0.3
(-3)
A 		0.3
(-3)
A 		2.2
(-1.5)
A 		8
avr 1
(-2.8) 		4
(3) 		2.2
(-0.5) 		0.9
(-3) 		3
(1.1) 		2.3
(-0.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11988
Sequence Type Exemplar sequence
Representative Public ID ZC487.3 NCBI
Target Description ZC487.3 /REP_DB=WormBase Gene ID /WP=CE26335 /TR=Q23350 /GB=AAA92539.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072303(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072303 NCBI Caenorhabditis elegans ZC487.3 (ZC487.3) mRNA, complete cds. 11/11 None
ZC487.3 ENSEMBL cdna:known chromosome:CEL140:V:6726060:6726358:-1 gene:ZC487.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6726060-6726359(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC487.3
Entrez Gene 191190 Entrez gene
SwissProt Q23350 EMBL-EBI
WormBase CE26335 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA92539 Hypothetical protein ZC487.3 [Caenorhabditis elegans] ref|NP_504704.1| ZC487.3 [Caenorhabditis elegans] 7.0E-20
Sequence
Target Sequence 
>C. ELEGANS:181839_AT
gataagcttgtcatgtcgttattcacagcaattctattgcattgaccaatatattttttc
aatattttttatcgagttctttgcgttcaaacttgaaaagccactgattgcagaaaacgg
atggttatttgattctgagcatcttttaactcttcctttcccatttcctctagttttatc
tttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAAGCTTGTCATGTCGTTATTCA 17 423 15 Antisense
GTCGTTATTCACAGCAATTCTATTG 512 473 29 Antisense
AGCAATTCTATTGCATTGACCAATA 36 77 41 Antisense
TTTTTTATCGAGTTCTTTGCGTTCA 246 675 79 Antisense
GAGTTCTTTGCGTTCAAACTTGAAA 459 397 88 Antisense
AAACTTGAAAAGCCACTGATTGCAG 82 125 103 Antisense
AACGGATGGTTATTTGATTCTGAGC 513 143 130 Antisense
GATTCTGAGCATCTTTTAACTCTTC 46 433 145 Antisense
TGAGCATCTTTTAACTCTTCCTTTC 406 569 150 Antisense
TTCCCATTTCCTCTAGTTTTATCTT 669 697 172 Antisense
CATTTCCTCTAGTTTTATCTTTCCG 184 215 176 Antisense
Sequence Source Affymetrix Proprietary Database