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[181838_at]

Description C14A4.11 /REP_DB=WormBase Gene ID /WP=CE02140 /TR=Q17958 /GB=CAA90115.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_highest_8_8 > 08      4grp_high_8_8 > 44      6grp_highest_nonorm > 83      6grp_total > 59      4grp_total > 51      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 474.8
(0.5)
P 		547.5
(3)
P 		441.9
(-0.6)
P 		372.6
(-3)
P 		175
B 457.9
(0.1)
P 		551
(3)
P 		492.8
(1.2)
P 		355.6
(-3)
P 		195
C 477
(1)
P 		489.4
(1.4)
P 		535.6
(3)
P 		360.4
(-3)
P 		175
avr 469.9
(0.9) 		529.3
(3) 		490.1
(1.6) 		362.9
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 511.2
(2.1)
P 		481.8
(1.5)
P 		279.8
(-3)
P 		402.1
(-0.3)
P 		445.4
(0.7)
P 		551.9
(3)
P 		272
B 468.4
(1.6)
P 		438.2
(0.6)
P 		320.3
(-3)
P 		411.3
(-0.2)
P 		461.2
(1.3)
P 		515
(3)
P 		195
C 502.3
(-0.4)
P 		353.7
(-3)
P 		436.1
(-1.6)
P 		417.7
(-1.9)
P 		528.6
(0)
P 		700
(3)
P 		346
avr 494
(0.7) 		424.6
(-1) 		345.4
(-3) 		410.4
(-1.4) 		478.4
(0.3) 		589
(3) 		244
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 172.9
(3)
P 		118.8
(0.3)
P 		115.5
(0.1)
P 		54.5
(-3)
P 		118
B 146
(3)
P 		136.1
(2.2)
P 		114.2
(0.3)
P 		75.8
(-3)
P 		70
C 157.9
(1.6)
P 		140.7
(0.8)
P 		186.7
(3)
P 		60.8
(-3)
P 		126
avr 158.9
(3) 		131.9
(1.3) 		138.8
(1.7) 		63.7
(-3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 94.2
(-1.2)
P 		171.4
(3)
P 		60.9
(-3)
P 		102
(-0.8)
P 		134.4
(1)
P 		134.4
(1)
P 		111
B 163
(1.5)
P 		145.9
(0.6)
P 		77.8
(-3)
P 		109
(-1.4)
P 		187.4
(2.8)
P 		192
(3)
P 		114
C 186.2
(1.1)
P 		107.9
(-2)
P 		111
(-1.9)
P 		84
(-3)
P 		171
(0.5)
P 		234.3
(3)
P 		150
avr 147.8
(0.7) 		141.7
(0.4) 		83.2
(-3) 		98.3
(-2.1) 		164.3
(1.7) 		186.9
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2674
Sequence Type Exemplar sequence
Representative Public ID C14A4.11 NCBI
Target Description C14A4.11 /REP_DB=WormBase Gene ID /WP=CE02140 /TR=Q17958 /GB=CAA90115.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063889(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063889 NCBI Caenorhabditis elegans C14A4.11 (C14A4.11) mRNA, complete cds. 10/11 None
SNAP00000002493 ENSEMBL cdna:SNAP chromosome:CEL140:II:10606036:10607176:-1 9/11 None
GENEFINDER00000002501 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10605998:10607176:-1 11/11 None
C14A4.11 ENSEMBL cdna:known chromosome:CEL140:II:10605633:10607186:-1 gene:C14A4.11 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10605994-10607173(-) 97.72 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A4.11
Entrez Gene 174638 Entrez gene
SwissProt Q17958 EMBL-EBI
WormBase CE30598 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17926.1.S1_S_AT similar to programmed cell death 10 cfa
CANINE_2:CFA.2830.1.S1_S_AT similar to programmed cell death 10 cfa
DROSOPHILA_2:1639588_AT dm
DROSGENOME1:149953_AT dm
CHICKEN:GGA.6335.1.S1_AT programmed cell death 10 gga
CHICKEN:GGAAFFX.12782.1.S1_S_AT programmed cell death 10 gga
HG-U95AV2:35218_AT programmed cell death 10 hs
HG-U133_PLUS_2:210907_S_AT programmed cell death 10 hs
HG-U133A:210907_S_AT programmed cell death 10 hs
HG-FOCUS:210907_S_AT programmed cell death 10 hs
HG-U133A_2:210907_S_AT programmed cell death 10 hs
HU35KSUBA:RC_AA599041_AT programmed cell death 10 hs
U133_X3P:G12803370_3P_A_AT programmed cell death 10 hs
MG-U74BV2:162727_AT programmed cell death 10 mm
MOE430A:1448528_AT programmed cell death 10 mm
MOUSE430A_2:1448528_AT programmed cell death 10 mm
MOUSE430_2:1448528_AT programmed cell death 10 mm
MOE430A:1448527_AT programmed cell death 10 mm
MOUSE430A_2:1448527_AT programmed cell death 10 mm
MOUSE430_2:1448527_AT programmed cell death 10 mm
MOE430B:1437530_AT Programmed cell death 10, mRNA (cDNA clone MGC:19291 IMAGE:4022513) mm
MOUSE430_2:1437530_AT Programmed cell death 10, mRNA (cDNA clone MGC:19291 IMAGE:4022513) mm
MU19KSUBB:TC29654_AT Programmed cell death 10, mRNA (cDNA clone MGC:19291 IMAGE:4022513) mm
RT-U34:AA848546_AT similar to programmed cell death 10 rn
RG-U34A:AA848546_AT similar to programmed cell death 10 rn
RT-U34:RC_AA848545_AT similar to programmed cell death 10 rn
RG-U34A:RC_AA848545_AT similar to programmed cell death 10 rn
RAE230A:1389325_AT similar to programmed cell death 10 rn
RAT230_2:1389325_AT similar to programmed cell death 10 rn
Protein Similarities
Method ID Description E-Value
blast CAA90115 Hypothetical protein C14A4.11 [Caenorhabditis elegans] ref|NP_496290.2| C14A4.11 [Caenorhabditis elegans] 1.0E-117
blast CAE59637 Hypothetical protein CBG03050 [Caenorhabditis briggsae] 1.0E-114
blast CAA90115 Hypothetical protein C14A4.11 [Caenorhabditis elegans] ref|NP_496290.2| C14A4.11 [Caenorhabditis elegans] 1.0E-103
blast CAE59637 Hypothetical protein CBG03050 [Caenorhabditis briggsae] 1.0E-101
blast EAA43863 ENSANGP00000025201 [Anopheles gambiae str. PEST] ref|XP_317179.2| ENSANGP00000025201 [Anopheles gambiae str. PEST] 5.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR009652 EMBL-EBI Protein of unknown function DUF1241 4.6E-33
Pfam IPR009652 EMBL-EBI Protein of unknown function DUF1241 5.8E-26
Sequence
Target Sequence 
>C. ELEGANS:181838_AT
tgatgatccaagagcttctctcgccctaaacaaactgcacactgcactgaccacttgtga
acaagcttctccgtcgtttctctatgatttcacaaaagttttgctggatgactcggaatt
gagcgttaatctgcaggaatcctatctgagaatgcatgacacctcgccgacaaatgattt
gattgtcagtggatatgagcagaatgctgattataaagagctcacgaaacgagcaatcga
gcttcgtcgtgttctgtcccgggttcccgaagaaatgtcggatcgtcacgccttcctgga
gaccatcaagctcatcgcatcatcaatcaagaaacttcttgaggcaataaacgccgtcta
cagaattgttccactcactgcgcagccggccgttgagaaacgtaaacgggaatttgtgca
ctactcgaaaagattcagtaacactttgaagacgtattttaaagatcagaatgcaaatca
ggttcgtgggaaaaaatgtatccgtgtccgccaaccaactggttttccaaacgacaatga
tagtccgcacaatcaacgaaaaacttcgccgaggataagctcaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGATCCAAGAGCTTCTCTCGCC 359 567 99 Antisense
TTCTCTCGCCCTAAACAAACTGCAC 211 693 114 Antisense
TGCACACTGCACTGACCACTTGTGA 609 577 134 Antisense
TCCGTCGTTTCTCTATGATTTCACA 399 595 168 Antisense
AGCAATCGAGCTTCGTCGTGTTCTG 94 75 330 Antisense
AAGAAATGTCGGATCGTCACGCCTT 362 153 368 Antisense
TGGAGACCATCAAGCTCATCGCATC 412 549 395 Antisense
TACAGAATTGTTCCACTCACTGCGC 314 643 457 Antisense
AACGGGAATTTGTGCACTACTCGAA 482 141 503 Antisense
GAAAAAATGTATCCGTGTCCGCCAA 553 353 588 Antisense
AACTTCGCCGAGGATAAGCTCACCC 516 137 660 Antisense
Sequence Source Affymetrix Proprietary Database