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[181837_at]

Description F10E7.5 /REP_DB=WormBase Gene ID /WP=CE04360 /TR=Q19302 /GB=AAA82424.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 48      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12177
1 2 3 4 range
A 3506.8
(-3)
P 		4331.1
(-2.6)
P 		3527.4
(-3)
P 		14867.4
(3)
P 		11361
B 3809.3
(-2.8)
P 		3759.3
(-2.8)
P 		3323.4
(-3)
P 		15500.7
(3)
P 		12177
C 3823.1
(-2.8)
P 		3650.3
(-2.9)
P 		3388.5
(-3)
P 		15342.8
(3)
P 		11954
avr 3713.1
(-2.8) 		3913.6
(-2.7) 		3413.1
(-3) 		15237
(3) 		11824

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2417
1 2 3 4 5 6 range
A 2924.9
(-2.5)
P 		2818.4
(-3)
P 		2994.1
(-2.2)
P 		3149.6
(-1.4)
P 		3437.5
(-0.1)
P 		4099.8
(3)
P 		1281
B 2733.8
(-3)
P 		3040.8
(-2.1)
P 		3229.4
(-1.5)
P 		3079.7
(-2)
P 		3675.4
(-0.2)
P 		4722.3
(3)
P 		1989
C 2512.4
(-3)
P 		3127.9
(-1.5)
P 		2767.3
(-2.4)
P 		3834.5
(0.3)
P 		3179.1
(-1.3)
P 		4929.7
(3)
P 		2417
avr 2723.7
(-3) 		2995.7
(-2.1) 		2996.9
(-2.1) 		3354.6
(-1) 		3430.7
(-0.7) 		4583.9
(3) 		1860
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2533
1 2 3 4 range
A 1276.8
(-1.3)
P 		940.2
(-2.9)
P 		922.1
(-3)
P 		2176.3
(3)
P 		1254
B 1214.7
(-1.9)
P 		928.5
(-2.6)
P 		770.1
(-3)
P 		3303.2
(3)
P 		2533
C 1265.5
(-2.2)
P 		1049.5
(-3)
P 		1181
(-2.5)
P 		2587
(3)
P 		1538
avr 1252.3
(-2) 		972.7
(-2.9) 		957.7
(-3) 		2688.8
(3) 		1731

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1222
1 2 3 4 5 6 range
A 539.2
(-3)
P 		1002.4
(2.6)
P 		652
(-1.6)
P 		798.8
(0.1)
P 		1037.3
(3)
P 		998.2
(2.5)
P 		498
B 951.2
(-2)
P 		1012.2
(-1.6)
P 		784.2
(-3)
P 		815.7
(-2.8)
P 		1493.3
(1.4)
P 		1760.9
(3)
P 		977
C 931.2
(-1.6)
P 		954.4
(-1.4)
P 		704.3
(-3)
P 		771.1
(-2.6)
P 		1028.7
(-0.9)
P 		1650.2
(3)
P 		946
avr 807.2
(-2.3) 		989.7
(-0.8) 		713.5
(-3) 		795.2
(-2.4) 		1186.4
(0.8) 		1469.8
(3) 		756
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181837_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4619
Sequence Type Exemplar sequence
Representative Public ID F10E7.5 NCBI
Target Description F10E7.5 /REP_DB=WormBase Gene ID /WP=CE04360 /TR=Q19302 /GB=AAA82424.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063069(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063069 NCBI Caenorhabditis elegans F10E7.5 (F10E7.5) mRNA, complete cds. 11/11 None
SNAP00000000728 ENSEMBL cdna:SNAP chromosome:CEL140:II:7111922:7112775:1 11/11 None
GENEFINDER00000000736 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7111922:7112775:1 11/11 None
F10E7.5 ENSEMBL cdna:known chromosome:CEL140:II:7111908:7112894:1 gene:F10E7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7111917-7112771(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E7.5
Entrez Gene 174168 Entrez gene
SwissProt Q19302 EMBL-EBI
WormBase CE04360 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1595152_AT similar to ribosomal protein P0-like protein cfa
CANINE_2:CFA.15122.1.S1_AT similar to ribosomal protein P0-like protein cfa
CANINE_2:CFAAFFX.23366.1.S1_S_AT similar to ribosomal protein P0-like protein cfa
CHICKEN:GGA.5186.1.S1_S_AT similar to ribosomal protein P0-like protein; 60S acidic ribosomal protein PO; ribosomal protein, large, P0-like gga
HG-U133_PLUS_2:220688_S_AT chromosome 1 open reading frame 33 hs
HG-U133A:220688_S_AT chromosome 1 open reading frame 33 hs
HG-FOCUS:220688_S_AT chromosome 1 open reading frame 33 hs
HG-U133A_2:220688_S_AT chromosome 1 open reading frame 33 hs
HU35KSUBA:W27054_AT chromosome 1 open reading frame 33 hs
HU35KSUBC:RC_T03446_AT chromosome 1 open reading frame 33 hs
HU35KSUBC:RC_AA035540_AT chromosome 1 open reading frame 33 hs
U133_X3P:G7705874_3P_A_AT chromosome 1 open reading frame 33 hs
HG-U133_PLUS_2:235783_AT Chromosome 1 open reading frame 33 hs
HG-U133B:235783_AT Chromosome 1 open reading frame 33 hs
HG-U95B:47915_AT Chromosome 1 open reading frame 33 hs
HU35KSUBD:RC_AA210943_AT Chromosome 1 open reading frame 33 hs
MU11KSUBA:AA672475_S_AT RIKEN cDNA 2610012O22 gene mm
MG-U74AV2:97252_AT RIKEN cDNA 2610012O22 gene mm
MOE430A:1423823_AT RIKEN cDNA 2610012O22 gene mm
MOUSE430A_2:1423823_AT RIKEN cDNA 2610012O22 gene mm
MOUSE430_2:1423823_AT RIKEN cDNA 2610012O22 gene mm
RG-U34A:RC_AA891838_AT similar to ribosomal protein P0-like protein; 60S acidic ribosomal protein PO; ribosomal protein, large, P0-like (predicted) rn
RAE230A:1372043_AT similar to ribosomal protein P0-like protein; 60S acidic ribosomal protein PO; ribosomal protein, large, P0-like (predicted) rn
RAT230_2:1372043_AT similar to ribosomal protein P0-like protein; 60S acidic ribosomal protein PO; ribosomal protein, large, P0-like (predicted) rn
RAE230B:1378120_AT Similar to ribosomal protein P0-like protein; 60S acidic ribosomal protein PO; ribosomal protein, large, P0-like (predicted) rn
RAT230_2:1378120_AT Similar to ribosomal protein P0-like protein; 60S acidic ribosomal protein PO; ribosomal protein, large, P0-like (predicted) rn
YEAST_2:1774349_AT Protein involved in mRNA turnover and ribosome assembly, localizes to the nucleolus Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82424 Hypothetical protein F10E7.5 [Caenorhabditis elegans] ref|NP_495470.1| F10E7.5 [Caenorhabditis elegans] 1.0E-96
blast CAE67543 Hypothetical protein CBG13068 [Caenorhabditis briggsae] 4.0E-92
blast AAF58844 CG1381-PA [Drosophila melanogaster] ref|NP_610554.1| CG1381-PA [Drosophila melanogaster] gb|AAL29065.1| LD47064p [Drosophila melanogaster] 2.0E-46
Sequence
Target Sequence 
>C. ELEGANS:181837_AT
ggtccgtgcaagtgtcgatcagtacaaaaaccttttcattttcacgattgctaacatgag
aagcacacgattcattgccatcagacaaaagtacaaggagaattcaagatttttcttcgg
aaagaacaatgtcatttctatcgctcttggaaaacagaagtctgatgagtacgcaaatca
gcttcacaaagccagtgcaattctgaagggtcaatgcggtctcatgttcaccaacatgtc
caaaaaggaagttgaggctgaattctccgaagcttcagaagaagattacgctcgtgtagg
agatgttgccacagagacagttgttctaccagaaggaccaatttcacaatttgccttctc
tatggagccacaactgcgaaaacttggtctcccaacgaaacttgacaaaggagttatcac
cctctaccaacagtttgaggtgtgcaaagaaggcgaaccgctgactgtggagcaggctaa
aatcttgaagcacttcgaagtgaagatgtctcaattccgtcttatcttcaaagctcactg
g

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCCGTGCAAGTGTCGATCAGTAC 589 501 99 Antisense
AAACCTTTTCATTTTCACGATTGCT 646 125 126 Antisense
GAAGCACACGATTCATTGCCATCAG 465 341 158 Antisense
CAATGTCATTTCTATCGCTCTTGGA 224 183 225 Antisense
GAAGGGTCAATGCGGTCTCATGTTC 590 333 303 Antisense
ATTTGCCTTCTCTATGGAGCCACAA 502 17 447 Antisense
ACAACTGCGAAAACTTGGTCTCCCA 149 111 468 Antisense
TATCACCCTCTACCAACAGTTTGAG 49 661 513 Antisense
GAACCGCTGACTGTGGAGCAGGCTA 98 347 553 Antisense
GAAGATGTCTCAATTCCGTCTTATC 311 339 600 Antisense
CCGTCTTATCTTCAAAGCTCACTGG 188 265 615 Antisense
Sequence Source Affymetrix Proprietary Database