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[181836_at]

Description F59H6.8 /REP_DB=WormBase Gene ID /WP=CE20914 /TR=Q9N5Q1 /GB=AAF39856.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 08      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.6
(-3)
A 		3
(-2.9)
A 		21
(3)
A 		10
(-0.6)
A 		18
B 6.6
(-0.6)
A 		3.5
(-3)
A 		4.2
(-2.5)
A 		11.2
(3)
A 		8
C 3.2
(-3)
A 		4.2
(-2.8)
A 		3.5
(-2.9)
A 		27.2
(3)
A 		24
avr 4.1
(-2.8) 		3.6
(-3) 		9.6
(-0.1) 		16.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 6.8
(-2.9)
A 		4.8
(-3)
A 		8.5
(-2.7)
A 		23.8
(-1.6)
A 		52
(0.4)
A 		87.1
(3)
A 		82
B 5.4
(-2.9)
A 		4.3
(-3)
A 		4.5
(-3)
A 		54.6
(1.4)
A 		72.3
(3)
P 		41
(0.2)
P 		68
C 3.2
(-3)
A 		33.2
(1.1)
A 		5.2
(-2.7)
A 		18.8
(-0.9)
A 		43
(2.5)
A 		47
(3)
P 		44
avr 5.1
(-3) 		14.1
(-2) 		6.1
(-2.9) 		32.4
(0.1) 		55.8
(2.7) 		58.4
(3) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1
(-2.5)
A 		0.6
(-3)
A 		5.5
(3)
A 		1.5
(-1.9)
A 		5
B 2.1
(1.8)
A 		0.9
(-3)
A 		1
(-2.6)
A 		2.4
(3)
A 		2
C 1.1
(-3)
A 		1.2
(-2.8)
A 		1.2
(-2.8)
A 		4.6
(3)
A 		4
avr 1.4
(-1.4) 		0.9
(-3) 		2.6
(2.4) 		2.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.3
(-3)
A 		1.7
(-2.9)
A 		1.9
(-2.8)
A 		6
(-1.6)
A 		15.7
(1.3)
A 		21.2
(3)
A 		20
B 1.9
(-2.8)
A 		1.4
(-2.9)
A 		1.1
(-3)
A 		14.5
(-0.2)
A 		29.4
(3)
P 		15.3
(0)
P 		28
C 1.2
(-3)
A 		10.1
(0.7)
A 		1.3
(-3)
A 		3.8
(-1.9)
A 		13.9
(2.3)
A 		15.7
(3)
P 		15
avr 1.5
(-3) 		4.4
(-2) 		1.4
(-3) 		8.1
(-0.8) 		19.7
(3) 		17.4
(2.2) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4508
Sequence Type Exemplar sequence
Representative Public ID F59H6.8 NCBI
Target Description F59H6.8 /REP_DB=WormBase Gene ID /WP=CE20914 /TR=Q9N5Q1 /GB=AAF39856.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061754(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061754 NCBI Caenorhabditis elegans F59H6.8 (F59H6.8) mRNA, complete cds. 11/11 None
SNAP00000002427 ENSEMBL cdna:SNAP chromosome:CEL140:II:2025643:2026611:-1 11/11 None
GENEFINDER00000002437 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2022879:2028799:-1 10/11 None
F59H6.8 ENSEMBL cdna:known chromosome:CEL140:II:2025643:2026611:-1 gene:F59H6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2025641-2026610(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-21
Ensembl F59H6.8
Entrez Gene 186647 Entrez gene
SwissProt Q9N5Q1 EMBL-EBI
WormBase CE20914 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 1.0E-169
blast AAF39856 Hypothetical protein F59H6.8 [Caenorhabditis elegans] ref|NP_494155.1| F59H6.8 [Caenorhabditis elegans] 1.0E-145
blast AAF39856 Hypothetical protein F59H6.8 [Caenorhabditis elegans] ref|NP_494155.1| F59H6.8 [Caenorhabditis elegans] 1.0E-143
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 1.0E-100
blast AAF39857 Hypothetical protein F59H6.9 [Caenorhabditis elegans] ref|NP_494156.1| F59H6.9 [Caenorhabditis elegans] 1.0E-76
blast AAB94977 Hypothetical protein F52C6.11 [Caenorhabditis elegans] ref|NP_494125.2| F52C6.11 [Caenorhabditis elegans] 5.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.1E-19
Pfam IPR000210 EMBL-EBI BTB/POZ domain 7.0E-38
Pfam IPR002083 EMBL-EBI MATH 5.5E-28
Pfam IPR002083 EMBL-EBI MATH 1.1E-19
Pfam IPR000210 EMBL-EBI BTB/POZ domain 8.1E-36
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.8E-31
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 3.2E-9
Sequence
Target Sequence 
>C. ELEGANS:181836_AT
aagacgatgttcccgcgggagttgaaggagaattcaccataaaactcactaattcatctg
gaataagtacatcgaaatctagtagattgaaactagtaaaaaatggtggacttggattcc
ttaaaattgtgtggaaagtaatgcaagatgaataccttatcgatgacagtattatcattg
aggcaactgtcaagatcaccaagatgacagggatctctaagaaaccgctcaaatgctttg
atcagtcaaaggaaaaattttctgatgtgattttggcagttggagaccaaaagttctttg
ttctcagaaagttccttgcctcccactccaccttcttcgagtcccggtttcttggaaatt
tcgatgaagctgataaatccgaggttacactccgagacatcgattccgccgactttcaga
atcttctagaggttctgtacggagagcctgctatagatgatgacacggttgacgggattc
tccacttggcccacatgtacgatattccgcttccgattcggaaatgcgaagagtttctga
tcgaagtatctgaaaaatcgatgaaagatcagcttgtgcttgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACGATGTTCCCGCGGGAGTTGA 294 153 197 Antisense
GACAGGGATCTCTAAGAAACCGCTC 110 369 402 Antisense
GAAACCGCTCAAATGCTTTGATCAG 631 357 417 Antisense
TTGTTCTCAGAAAGTTCCTTGCCTC 126 681 494 Antisense
AAATCCGAGGTTACACTCCGAGACA 365 119 571 Antisense
TTACACTCCGAGACATCGATTCCGC 412 681 581 Antisense
TTCCGCCGACTTTCAGAATCTTCTA 213 699 600 Antisense
GAGAGCCTGCTATAGATGATGACAC 155 395 638 Antisense
TGACACGGTTGACGGGATTCTCCAC 13 573 657 Antisense
CACATGTACGATATTCCGCTTCCGA 45 197 688 Antisense
ATGAAAGATCAGCTTGTGCTTGCCA 269 45 757 Antisense
Sequence Source Affymetrix Proprietary Database