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[181835_at]

Description F55G11.7 /REP_DB=WormBase Gene ID /WP=CE18753 /TR=Q9XUD5 /GB=CAB05221.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 45
(0.3)
P 		12.4
(-3)
A 		35
(-0.7)
A 		71.5
(3)
A 		59
B 53.7
(3)
P 		51.5
(2.5)
A 		27.5
(-3)
A 		44.1
(0.8)
A 		26
C 77
(3)
P 		41
(0.1)
A 		2.3
(-3)
A 		42.8
(0.3)
A 		75
avr 58.6
(3) 		35
(-0.8) 		21.6
(-3) 		52.8
(2.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 27.8
(-0.6)
A 		2.9
(-3)
A 		64.2
(3)
A 		42.6
(0.9)
A 		20.9
(-1.2)
A 		15.4
(-1.8)
A 		61
B 55.7
(3)
P 		27.1
(-1)
A 		18.2
(-2.3)
A 		13
(-3)
A 		21.3
(-1.8)
A 		29.4
(-0.7)
A 		43
C 46.3
(3)
A 		34.2
(-0.1)
A 		23.7
(-2.7)
A 		36
(0.4)
A 		30.1
(-1.1)
A 		22.7
(-3)
A 		24
avr 43.3
(3) 		21.4
(-3) 		35.4
(0.8) 		30.5
(-0.5) 		24.1
(-2.3) 		22.5
(-2.7) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 16.4
(3)
P 		2.7
(-3)
A 		9.2
(-0.2)
A 		10.5
(0.4)
A 		14
B 17.1
(3)
P 		12.7
(0.5)
A 		6.4
(-3)
A 		9.4
(-1.3)
A 		11
C 25.5
(3)
P 		11.8
(-0.3)
A 		0.8
(-3)
A 		7.2
(-1.4)
A 		25
avr 19.7
(3) 		9.1
(-1.5) 		5.5
(-3) 		9
(-1.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.1
(-1.1)
A 		1
(-3)
A 		14
(3)
A 		10.8
(1.5)
A 		6.3
(-0.6)
A 		3.8
(-1.7)
A 		13
B 19.4
(3)
P 		9
(-0.9)
A 		4.4
(-2.6)
A 		3.4
(-3)
A 		8.7
(-1)
A 		11
(-0.2)
A 		16
C 17.2
(3)
A 		10.4
(-0.6)
A 		6
(-3)
A 		7.2
(-2.4)
A 		9.7
(-1)
A 		7.6
(-2.1)
A 		11
avr 13.9
(3) 		6.8
(-3) 		8.1
(-1.9) 		7.1
(-2.7) 		8.2
(-1.8) 		7.5
(-2.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9820
Sequence Type Exemplar sequence
Representative Public ID F55G11.7 NCBI
Target Description F55G11.7 /REP_DB=WormBase Gene ID /WP=CE18753 /TR=Q9XUD5 /GB=CAB05221.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070079 NCBI Caenorhabditis elegans F55G11.7 (F55G11.7) mRNA, complete cds. 11/11 None
SNAP00000016142 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12960506:12964552:1 11/11 None
GENEFINDER00000016155 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12958000:12967213:1 11/11 None
F55G11.7 ENSEMBL cdna:known chromosome:CEL140:IV:12960493:12962090:1 gene:F55G11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12960511-12962096(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G11.7
Entrez Gene 178246 Entrez gene
SwissProt Q9XUD5 EMBL-EBI
WormBase CE18753 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05221 Hypothetical protein F55G11.7 [Caenorhabditis elegans] ref|NP_502480.1| F55G11.7 [Caenorhabditis elegans] 0.0
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 0.0
blast CAB05216 Hypothetical protein F55G11.5 [Caenorhabditis elegans] ref|NP_502482.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-22) [Caenorhabditis elegans] 0.0
blast CAB05215 Hypothetical protein F55G11.6 [Caenorhabditis elegans] ref|NP_502479.1| F55G11.6 [Caenorhabditis elegans] 1.0E-153
blast CAB05215 Hypothetical protein F55G11.6 [Caenorhabditis elegans] ref|NP_502479.1| F55G11.6 [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 9.7E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.9E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.6E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 9.7E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.0E-50
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.5E-50
Sequence
Target Sequence 
>C. ELEGANS:181835_AT
gaacgacgatgctgcaatcggggctaatggattggttatgaatgtgacgagtcaagttat
cgctatgcaatactattcaattggtgactctcttacattgatggccttccctgtaaaccc
aaagaattattattcattgagaagtacacttgtatttgatggacacgattgcacctcttt
taactatatttcaaatctctaccagctgtaccaaacgaaagagcaatgggtatccagtca
agacgaaatcatcatagtgaaccttgaagccagtagttctaatgataaactccttattca
agcatctaaatatttgactggaaccggtgagatggtggagcttcaccctcaggccaactc
aatctataacggaactgtaaacggaggaacacagatgtcatcacttgttgcggtgactga
tctctcaatgcaaatgattgatgttcagatggaaagtgacgctacagtcacagtttacta
tggttctccagacgcatcaactcttaataaatcttatactagaacacagttgaaaaatgc
acttccattatcgtttcgtggacctttcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGACGATGCTGCAATCGGGGCT 473 345 423 Antisense
TGGTGACTCTCTTACATTGATGGCC 253 553 504 Antisense
TACATTGATGGCCTTCCCTGTAAAC 87 645 516 Antisense
TTTGATGGACACGATTGCACCTCTT 577 653 577 Antisense
ATTGCACCTCTTTTAACTATATTTC 645 5 590 Antisense
TCAAATCTCTACCAGCTGTACCAAA 409 629 613 Antisense
GATAAACTCCTTATTCAAGCATCTA 330 423 706 Antisense
CACAGATGTCATCACTTGTTGCGGT 572 193 812 Antisense
TTGCGGTGACTGATCTCTCAATGCA 336 701 830 Antisense
AATGCACTTCCATTATCGTTTCGTG 459 165 958 Antisense
CATTATCGTTTCGTGGACCTTTCGT 326 213 968 Antisense
Sequence Source Affymetrix Proprietary Database