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[181834_at]

Description B0205.1 /REP_DB=WormBase Gene ID /WP=CE17315 /TR=O61746 /GB=AAC16990.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 95      6grp_total > 76      4grp_total > 54      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 129.1
(3)
P 		61.7
(-1)
A 		27.6
(-3)
A 		69.3
(-0.5)
A 		102
B 107.2
(3)
P 		93.3
(1.9)
A 		61.7
(-0.7)
A 		33.3
(-3)
A 		74
C 119.6
(3)
P 		69.9
(-0.4)
A 		107.8
(2.2)
A 		31.4
(-3)
A 		88
avr 118.6
(3) 		75
(-0.5) 		65.7
(-1.3) 		44.7
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 86.4
(-3)
A 		111
(-2.1)
P 		94.9
(-2.7)
P 		131.5
(-1.4)
M 		146.4
(-0.9)
P 		259.5
(3)
P 		173
B 100.4
(-1.6)
P 		69.2
(-3)
P 		100.5
(-1.6)
P 		169.5
(1.5)
P 		77.2
(-2.6)
P 		204
(3)
P 		135
C 91.1
(-3)
P 		94
(-2.9)
P 		129
(-1.5)
P 		138.2
(-1.1)
P 		134.3
(-1.3)
P 		239.8
(3)
P 		149
avr 92.6
(-2.9) 		91.4
(-3) 		108.1
(-2.3) 		146.4
(-0.7) 		119.3
(-1.8) 		234.4
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 47
(3)
P 		13.4
(-2.1)
A 		7.2
(-3)
A 		10.1
(-2.6)
A 		40
B 34.2
(3)
P 		23
(0.5)
A 		14.3
(-1.4)
A 		7.1
(-3)
A 		27
C 39.6
(3)
P 		20.1
(-0.4)
A 		37.6
(2.7)
A 		5.3
(-3)
A 		34
avr 40.3
(3) 		18.8
(-0.9) 		19.7
(-0.8) 		7.5
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 15.9
(-3)
A 		39.5
(-0)
P 		20.7
(-2.4)
P 		33.3
(-0.8)
M 		44.2
(0.6)
P 		63.2
(3)
P 		47
B 34.9
(-1.7)
P 		23
(-3)
P 		24.4
(-2.8)
P 		44.9
(-0.5)
P 		31.4
(-2.1)
P 		76.1
(3)
P 		53
C 33.8
(-2.3)
P 		28.7
(-2.9)
P 		32.8
(-2.4)
P 		27.8
(-3)
P 		43.5
(-1.2)
P 		80.3
(3)
P 		53
avr 28.2
(-2.7) 		30.4
(-2.4) 		26
(-3) 		35.3
(-1.8) 		39.7
(-1.3) 		73.2
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181834_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1205
Sequence Type Exemplar sequence
Representative Public ID B0205.1 NCBI
Target Description B0205.1 /REP_DB=WormBase Gene ID /WP=CE17315 /TR=O61746 /GB=AAC16990.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060404 NCBI Caenorhabditis elegans B0205.1 (B0205.1) mRNA, complete cds. 11/11 None
SNAP00000024662 ENSEMBL cdna:SNAP chromosome:CEL140:I:10721898:10725105:-1 11/11 None
GENEFINDER00000024684 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10721898:10725105:-1 11/11 None
B0205.1 ENSEMBL cdna:known chromosome:CEL140:I:10721654:10726322:-1 gene:B0205.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10721828-10725036(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0205.1
Entrez Gene 172974 Entrez gene
SwissProt O61746 EMBL-EBI
WormBase CE36908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16990 Hypothetical protein B0205.1 [Caenorhabditis elegans] ref|NP_492805.2| B0205.1 [Caenorhabditis elegans] 0.0
blast AAC68984 Hypothetical protein M57.1 [Caenorhabditis elegans] ref|NP_500368.1| M57.1 [Caenorhabditis elegans] 1.0E-121
blast AAC68984 Hypothetical protein M57.1 [Caenorhabditis elegans] ref|NP_500368.1| M57.1 [Caenorhabditis elegans] 1.0E-120
blast AAC02565 Hypothetical protein B0212.3 [Caenorhabditis elegans] ref|NP_500369.1| B0212.3 [Caenorhabditis elegans] 1.0E-90
blast AAC02565 Hypothetical protein B0212.3 [Caenorhabditis elegans] ref|NP_500369.1| B0212.3 [Caenorhabditis elegans] 4.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR006570 EMBL-EBI SPK 3.5E-56
Pfam IPR006570 EMBL-EBI SPK 8.5E-67
Pfam IPR006570 EMBL-EBI SPK 1.2E-59
Pfam IPR006570 EMBL-EBI SPK 9.6E-57
Pfam IPR006570 EMBL-EBI SPK 3.5E-56
Pfam IPR006570 EMBL-EBI SPK 8.5E-67
Pfam IPR006570 EMBL-EBI SPK 2.4E-63
Pfam IPR006570 EMBL-EBI SPK 9.6E-57
Pfam IPR006570 EMBL-EBI SPK 1.2E-59
Pfam IPR006570 EMBL-EBI SPK 9.6E-57
Sequence
Target Sequence 
>C. ELEGANS:181834_AT
ggaatcatgcatggctatccgaagcaggagcctgtatacgaggaaatcatcaatcaagac
atgagatacaacaatgaggatccacacattccaccagagattgaacaatttccgattcaa
gcagttcatcttgaagagccgaagttcgatccgatcagtagtatgaacataggtcgagga
acacttgcacaaagattcggaaccacttcaagtgaatctgacgggatcagcgttcacaat
tttttgatttcgctagaacttattctcacttctctcgaatcagatactctgattgatttg
atgagagagattaaagagcttcgaaatcggacaaatgatgagattcttccacctgatcta
gtgattccagccttgcagacgtgctttatgggaattactcgaaagtttcgaccggaagtt
tcagcaccgagcaaatcagcaggagagtgtctgagaatcctcaaatattctttgctttgg
ctccaaagtccgttgctttacgatctacaaaagagagttcaggaagaaattgaaaattgc
ggagctgatggaaaggttatcccaatcgccgacatccagcaaggtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCATGCATGGCTATCCGAAGC 312 533 1447 Antisense
ACAATGAGGATCCACACATTCCACC 639 107 1517 Antisense
ACAATTTCCGATTCAAGCAGTTCAT 218 115 1551 Antisense
GAGCCGAAGTTCGATCCGATCAGTA 690 385 1582 Antisense
ATAGGTCGAGGAACACTTGCACAAA 315 21 1615 Antisense
GAATCTGACGGGATCAGCGTTCACA 479 327 1660 Antisense
CCACCTGATCTAGTGATTCCAGCCT 406 273 1795 Antisense
TCCAGCCTTGCAGACGTGCTTTATG 343 587 1812 Antisense
TCGACCGGAAGTTTCAGCACCGAGC 93 603 1854 Antisense
GCTCCAAAGTCCGTTGCTTTACGAT 231 297 1926 Antisense
CAATCGCCGACATCCAGCAAGGTAT 70 179 2009 Antisense
Sequence Source Affymetrix Proprietary Database