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[181833_at]

Description K01A2.4 /REP_DB=WormBase Gene ID /WP=CE19512 /TR=Q9TZ56 /GB=AAC69502.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 61      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 502.8
(3)
P 		498.7
(2.9)
P 		427.2
(2.1)
P 		13.2
(-3)
A 		490
B 494.6
(3)
P 		358.1
(1.3)
P 		387.8
(1.7)
P 		8
(-3)
A 		487
C 548.6
(3)
P 		398.1
(1.2)
P 		357.2
(0.7)
P 		57.4
(-3)
A 		491
avr 515.3
(3) 		418.3
(1.8) 		390.7
(1.5) 		26.2
(-3) 		489

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 462.1
(3)
P 		432.8
(2.6)
P 		315.7
(0.9)
P 		255.4
(0.1)
P 		125.6
(-1.7)
A 		34.9
(-3)
A 		427
B 419
(3)
P 		382.3
(2.4)
P 		392.5
(2.6)
P 		194.4
(-0.5)
A 		85.7
(-2.1)
A 		30.5
(-3)
A 		389
C 483.8
(3)
P 		370.2
(1.4)
P 		370.9
(1.5)
P 		270.6
(0.1)
A 		129.3
(-1.8)
P 		44.7
(-3)
A 		439
avr 455
(3) 		395.1
(2.1) 		359.7
(1.6) 		240.1
(-0.1) 		113.5
(-1.9) 		36.7
(-3) 		418
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 183.1
(3)
P 		108.2
(0.5)
P 		111.7
(0.6)
P 		1.9
(-3)
A 		181
B 157.7
(3)
P 		88.5
(0.3)
P 		89.9
(0.4)
P 		1.7
(-3)
A 		156
C 181.6
(3)
P 		114.5
(0.7)
P 		124.5
(1)
P 		9.7
(-3)
A 		172
avr 174.1
(3) 		103.7
(0.5) 		108.7
(0.7) 		4.4
(-3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 85.2
(0.2)
P 		153.9
(3)
P 		68.8
(-0.5)
P 		64.8
(-0.7)
P 		37.9
(-1.8)
A 		8.5
(-3)
A 		145
B 145.8
(3)
P 		127.2
(2.2)
P 		95.3
(0.7)
P 		51.5
(-1.2)
A 		34.8
(-2)
A 		11.4
(-3)
A 		134
C 179.3
(3)
P 		113
(0.6)
P 		94.4
(-0.1)
P 		54.4
(-1.6)
A 		41.8
(-2)
P 		15
(-3)
A 		164
avr 136.8
(3) 		131.4
(2.7) 		86.2
(0.6) 		56.9
(-0.8) 		38.2
(-1.7) 		11.6
(-3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181833_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4123
Sequence Type Exemplar sequence
Representative Public ID K01A2.4 NCBI
Target Description K01A2.4 /REP_DB=WormBase Gene ID /WP=CE19512 /TR=Q9TZ56 /GB=AAC69502.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027057(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027057 NCBI Caenorhabditis elegans K01A2.4 (K01A2.4) mRNA, complete cds. 10/11 None
GENEFINDER00000016843 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:307544:309283:1 10/11 None
K01A2.4 ENSEMBL cdna:known chromosome:CEL140:II:307544:309058:1 gene:K01A2.4 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016845 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:307543-309058(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A2.4
Entrez Gene 3565272 Entrez gene
WormBase CE39022 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR12970 Hypothetical protein K01A2.4 [Caenorhabditis elegans] 1.0E-103
blast NP_001022228 K01A2.4 [Caenorhabditis elegans] 1.0E-100
blast AAR12970 Hypothetical protein K01A2.4 [Caenorhabditis elegans] 1.0E-100
blast T33642 hypothetical protein K01A2.4 - Caenorhabditis elegans 1.0E-92
blast NP_001022228 K01A2.4 [Caenorhabditis elegans] 2.0E-88
blast T33642 hypothetical protein K01A2.4 - Caenorhabditis elegans 1.0E-80
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022228.1 2 142-164,174-196
K01A2.4 2 142-164,174-196
GENEFINDER00000016843 3 163-182,197-219,232-254
Sequence
Target Sequence 
>C. ELEGANS:181833_AT
aagacacacaagcttcgggaaccgacccaaaaaatgatgccaccgatccgagtaaaacac
ccacagatggtaacaaagatgcaaccgaccaaaagaaaacatcttcaaatgaaaacaaag
atgcaaccgacccaaaacagacaccaacagatcacaaagatgaacatatcccgcagaaca
ttgcctctgttttgcaacacattcgggacccaaagttaatcaaggactttagcgcagcct
tgcaaagtttctcactcggacgtcatacgtcgaacggccattctgcctcagagacagttc
aggcctcgaacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACACACAAGCTTCGGGAACCGA 154 153 29 Antisense
AAAAATGATGCCACCGATCCGAGTA 486 127 58 Antisense
ACCGATCCGAGTAAAACACCCACAG 593 87 70 Antisense
CGACCCAAAACAGACACCAACAGAT 31 251 156 Antisense
ACATATCCCGCAGAACATTGCCTCT 461 105 192 Antisense
GTTTTGCAACACATTCGGGACCCAA 704 447 217 Antisense
AAGGACTTTAGCGCAGCCTTGCAAA 441 161 250 Antisense
GCCTTGCAAAGTTTCTCACTCGGAC 224 281 265 Antisense
GGACGTCATACGTCGAACGGCCATT 168 525 286 Antisense
GGCCATTCTGCCTCAGAGACAGTTC 245 543 304 Antisense
CAGAGACAGTTCAGGCCTCGAACGG 157 205 317 Antisense
Sequence Source Affymetrix Proprietary Database