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[181832_at]

Description F37C4.1 /REP_DB=WormBase Gene ID /WP=CE17801 /TR=O44404 /GB=AAB95167.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.3
(-3)
A 		4.9
(-2.4)
A 		6.7
(-0.6)
A 		10.2
(3)
A 		6
B 8.9
(1.1)
A 		12.1
(3)
A 		9.1
(1.2)
A 		2.1
(-3)
A 		10
C 7.4
(-0.7)
A 		8.8
(0.1)
A 		3.6
(-3)
A 		13.7
(3)
A 		10
avr 6.9
(-1.9) 		8.6
(2.7) 		6.5
(-3) 		8.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 33.9
(3)
A 		14.6
(-0.5)
A 		5.1
(-2.3)
A 		4.3
(-2.4)
A 		1.2
(-3)
A 		7.6
(-1.8)
A 		33
B 9.9
(0.7)
A 		13.9
(3)
A 		4.5
(-2.4)
A 		11.1
(1.4)
A 		6.1
(-1.5)
A 		3.5
(-3)
A 		10
C 3.4
(-3)
A 		11.4
(-1.6)
A 		38.5
(3)
A 		11.2
(-1.7)
A 		12.9
(-1.4)
A 		5.2
(-2.7)
A 		35
avr 15.7
(2.8) 		13.3
(1.5) 		16
(3) 		8.9
(-1) 		6.7
(-2.3) 		5.4
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.6
(1.3)
A 		1.1
(-3)
A 		1.8
(3)
A 		1.5
(0.4)
A 		1
B 2.8
(2.5)
A 		3
(3)
A 		2.1
(0.9)
A 		0.4
(-3)
A 		3
C 2.5
(3)
A 		2.5
(3)
A 		1.2
(-3)
A 		2.3
(2.1)
A 		1
avr 2.3
(3) 		2.2
(2.3) 		1.7
(-1) 		1.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.3
(3)
A 		5.2
(1.9)
A 		1.1
(-2.2)
A 		1.1
(-2.2)
A 		0.3
(-3)
A 		1.9
(-1.4)
A 		6
B 3.4
(0.9)
A 		4.6
(3)
A 		1.1
(-3)
A 		3
(0.3)
A 		2.5
(-0.6)
A 		1.3
(-2.7)
A 		4
C 1.2
(-3)
A 		3.5
(-1.4)
A 		9.8
(3)
A 		2.2
(-2.3)
A 		4.2
(-0.9)
A 		1.7
(-2.7)
A 		9
avr 3.6
(1.3) 		4.4
(3) 		4
(2.1) 		2.1
(-1.9) 		2.3
(-1.5) 		1.6
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10737
Sequence Type Exemplar sequence
Representative Public ID F37C4.1 NCBI
Target Description F37C4.1 /REP_DB=WormBase Gene ID /WP=CE17801 /TR=O44404 /GB=AAB95167.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068032 NCBI Caenorhabditis elegans F37C4.1 (F37C4.1) mRNA, complete cds. 11/11 None
SNAP00000037024 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3890875:3892557:1 11/11 None
GENEFINDER00000037045 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3890404:3892557:1 11/11 None
F37C4.1 ENSEMBL cdna:known chromosome:CEL140:IV:3889257:3892557:1 gene:F37C4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3889262-3892563(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37C4.1
Entrez Gene 185417 Entrez gene
SwissProt O44404 EMBL-EBI
WormBase CE17801 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB95167 Hypothetical protein F37C4.1 [Caenorhabditis elegans] ref|NP_500433.1| F37C4.1 [Caenorhabditis elegans] 0.0
blast CAE65676 Hypothetical protein CBG10742 [Caenorhabditis briggsae] 0.0
blast CAE65410 Hypothetical protein CBG10362 [Caenorhabditis briggsae] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 0.0
blast T32572 hypothetical protein F37C4.2 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.1E-88
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.8E-32
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.7E-29
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 4.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500433.1 9 12-31,35-57,80-99,140-162,169-191,211-228,237-259,269-286,293-315
F37C4.1 9 12-31,35-57,80-99,140-162,169-191,211-228,237-259,269-286,293-315
SNAP00000037024 3 20-42,49-66,76-98
GENEFINDER00000037045 2 37-54,61-83
Sequence
Target Sequence 
>C. ELEGANS:181832_AT
gcagggtgctgcatatggctgtgaacctttgtaccccactactcaatatacggtgtgtaa
ggcaaacttcacagatttcgagcaaagaattcgcaaggaaaagccggatttcgcttttat
cattacacgctatatatcaattggtgaaccatttccaaaaaacgtgacaacttttgaaca
agaccccatctaccagactatgaaggagcaaatgctaaaattcatctcaaatatcaagta
caaattgtacatacttgacgccgtgccacgaataaatgcaaaggttgtcaggagaattac
taaatttatgagaaaccacacggatccagtggctattgataaagcaatcgtcatattcca
tgaatacgagatggctcgaaaaagacacgcacaactgatcaaagactgcaatggaaaatg
tgtgttggtggattatgtgccagaattctacaatacggaaacaggaacattccggtattt
tgacaaacggggcttttcgtactggacgacacctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGGGTGCTGCATATGGCTGTGAA 570 311 1269 Antisense
TATGGCTGTGAACCTTTGTACCCCA 561 653 1282 Antisense
TTGTACCCCACTACTCAATATACGG 88 701 1297 Antisense
GGCAAACTTCACAGATTTCGAGCAA 457 535 1329 Antisense
GGATTTCGCTTTTATCATTACACGC 48 511 1374 Antisense
GACCCCATCTACCAGACTATGAAGG 647 381 1450 Antisense
ATACTTGACGCCGTGCCACGAATAA 44 25 1519 Antisense
GAAACCACACGGATCCAGTGGCTAT 653 357 1580 Antisense
GACACGCACAACTGATCAAAGACTG 328 367 1652 Antisense
CAGGAACATTCCGGTATTTTGACAA 349 203 1730 Antisense
GGCTTTTCGTACTGGACGACACCTT 30 537 1759 Antisense
Sequence Source Affymetrix Proprietary Database