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[181831_s_at]

Description F54D5.15 /REP_DB=WormBase Gene ID /WP=CE20871 /TR=Q9XVW8 /GB=CAA91340.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 70      6grp_total > 15      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 447.2
(3)
P 		383.3
(1.6)
P 		406
(2.1)
P 		176.4
(-3)
P 		271
B 404.6
(3)
P 		288.3
(0.7)
P 		356.5
(2)
P 		106.4
(-3)
P 		298
C 460.2
(3)
P 		313.4
(0.2)
P 		377.3
(1.4)
P 		146.9
(-3)
P 		313
avr 437.3
(3) 		328.3
(0.8) 		379.9
(1.8) 		143.2
(-3) 		294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 521.9
(3)
P 		435
(1.6)
P 		222.1
(-1.9)
P 		221.3
(-2)
P 		158.1
(-3)
P 		182.6
(-2.6)
P 		364
B 535.7
(3)
P 		369.8
(0.5)
P 		272.6
(-0.9)
P 		217.8
(-1.7)
P 		134.1
(-3)
P 		181.5
(-2.3)
P 		402
C 534.2
(3)
P 		405.6
(1)
P 		312.5
(-0.5)
P 		256.1
(-1.4)
P 		175
(-2.7)
P 		154.2
(-3)
P 		380
avr 530.6
(3) 		403.5
(1) 		269.1
(-1.2) 		231.7
(-1.8) 		155.7
(-3) 		172.8
(-2.7) 		375
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 162.8
(3)
P 		83.2
(-0.5)
P 		106.1
(0.5)
P 		25.8
(-3)
P 		137
B 129
(3)
P 		71.2
(-0.3)
P 		82.6
(0.4)
P 		22.7
(-3)
P 		106
C 152.3
(3)
P 		90.1
(0.1)
P 		131.5
(2)
P 		24.8
(-3)
P 		128
avr 148
(3) 		81.5
(-0.2) 		106.7
(1) 		24.4
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 96.2
(-0.2)
P 		154.7
(3)
P 		48.4
(-2.8)
P 		56.1
(-2.4)
P 		47.7
(-2.8)
P 		44.4
(-3)
P 		110
B 186.4
(3)
P 		123.1
(0.1)
P 		66.2
(-2.5)
P 		57.7
(-2.9)
P 		54.5
(-3)
P 		67.7
(-2.4)
P 		132
C 198
(3)
P 		123.8
(-0)
P 		79.5
(-1.9)
P 		51.5
(-3)
P 		56.6
(-2.8)
P 		51.6
(-3)
P 		147
avr 160.2
(3) 		133.9
(1.5) 		64.7
(-2.3) 		55.1
(-2.9) 		52.9
(-3) 		54.6
(-2.9) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181831_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3593
Sequence Type Exemplar sequence
Representative Public ID F54D5.15 NCBI
Target Description F54D5.15 /REP_DB=WormBase Gene ID /WP=CE20871 /TR=Q9XVW8 /GB=CAA91340.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027030(11), NM_001027028(11), NM_001027029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027030 NCBI Caenorhabditis elegans F54D5.15c (F54D5.15) mRNA, complete cds. 11/11 None
NM_001027028 NCBI Caenorhabditis elegans F54D5.15a (F54D5.15) mRNA, complete cds. 11/11 None
NM_001027029 NCBI Caenorhabditis elegans F54D5.15b (F54D5.15) mRNA, complete cds. 11/11 None
SNAP00000004670 ENSEMBL cdna:SNAP chromosome:CEL140:II:11558685:11561087:-1 11/11 None
GENEFINDER00000004679 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11558685:11564272:-1 11/11 None
F54D5.15c ENSEMBL cdna:known chromosome:CEL140:II:11558618:11564108:-1 gene:F54D5.15 11/11 None
F54D5.15a ENSEMBL cdna:known chromosome:CEL140:II:11558685:11564108:-1 gene:F54D5.15 11/11 None
F54D5.15b.2 ENSEMBL cdna:known chromosome:CEL140:II:11558685:11563277:-1 gene:F54D5.15 11/11 None
F54D5.15b.1 ENSEMBL cdna:known chromosome:CEL140:II:11558685:11563132:-1 gene:F54D5.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11558681-11563231(-) 100.0 100.0
Public Domain and Genome References
Ensembl F54D5.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH19083 Hypothetical protein F54D5.15c [Caenorhabditis elegans] ref|NP_001022201.1| F54D5.15c [Caenorhabditis elegans] 0.0
blast CAA91340 Hypothetical protein F54D5.15a [Caenorhabditis elegans] ref|NP_001022199.1| F54D5.15a [Caenorhabditis elegans] 0.0
blast CAH19084 Hypothetical protein F54D5.15b [Caenorhabditis elegans] ref|NP_001022200.1| F54D5.15b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181831_S_AT
ccacctaccaactatcatcaaaacggtggatacggtcagcagtacgaaccgaatttgtca
tcagttccgatttcaagtggtgcacagaatattaatatgctcactatttccagtggatat
gatgatggaagacaaatggttcagaagcagcaacaaccacagacatcaattaataggctt
gttcagcaagactctcctcaaacggctgacccaattgagcaacaagaggttctcctaatg
ctttatctgaaacagaatttggatattgttcgaggtctcggaatccacatcccacatgat
cttctcgcagaaatggacgatcttcagatattgccagtcgagttgagaatttgtgatgag
gaaccacaaagaggtcaaatgtttagcccagtcaacaaaaatggaagatatcagcgaaaa
cctcaaccgaatatggctccaaatcggcaggtgatgggacaaatgatgggacagaagtat
ggaagtcgaaaggatattccaatttcaacacgaagccgccagaatagtgaaatgagtaat
tcaaatgtggatctatcctatcatcatcatcagccacattcacatatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACCTACCAACTATCATCAAAACG 502 273 1012 Antisense
GTTCCGATTTCAAGTGGTGCACAGA 425 441 1075 Antisense
TTGTTCAGCAAGACTCTCCTCAAAC 338 707 1190 Antisense
CAAACGGCTGACCCAATTGAGCAAC 622 191 1210 Antisense
AGAGGTTCTCCTAATGCTTTATCTG 685 67 1236 Antisense
TCCCACATGATCTTCTCGCAGAAAT 146 597 1301 Antisense
GATCTTCAGATATTGCCAGTCGAGT 221 419 1330 Antisense
AAACCTCAACCGAATATGGCTCCAA 656 125 1429 Antisense
TCCAATTTCAACACGAAGCCGCCAG 66 587 1509 Antisense
TGTGGATCTATCCTATCATCATCAT 263 555 1557 Antisense
TCATCATCAGCCACATTCACATATG 82 621 1575 Antisense
Sequence Source Affymetrix Proprietary Database