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[181830_at]

Description E04F6.2 /REP_DB=WormBase Gene ID /WP=CE01214 /TR=Q19060 /GB=AAA68360.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 02      6grp_total > 40      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 133.3
(2.1)
P 		76.2
(-3)
P 		99
(-1)
P 		143.9
(3)
P 		68
B 118.5
(3)
P 		71.5
(-3)
A 		81.3
(-1.7)
P 		104
(1.1)
P 		47
C 131.5
(1.1)
P 		62.5
(-3)
A 		73.1
(-2.4)
P 		162.9
(3)
P 		100
avr 127.8
(2.2) 		70.1
(-3) 		84.5
(-1.7) 		136.9
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 85
(0.4)
P 		88.1
(0.7)
P 		115
(3)
P 		98.5
(1.6)
P 		45.6
(-3)
A 		64.4
(-1.4)
P 		69
B 90.4
(-0.2)
P 		123.8
(3)
P 		69.6
(-2.1)
P 		118.7
(2.5)
P 		66.5
(-2.4)
A 		60.4
(-3)
P 		63
C 83.5
(-0.9)
P 		88.8
(-0.6)
P 		66.4
(-2)
P 		147.2
(3)
P 		58.2
(-2.5)
M 		50.1
(-3)
A 		97
avr 86.3
(-0.3) 		100.2
(1) 		83.7
(-0.5) 		121.5
(3) 		56.8
(-3) 		58.3
(-2.9) 		65
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 48.5
(3)
P 		16.5
(-3)
P 		25.9
(-1.2)
P 		21.1
(-2.1)
P 		32
B 37.8
(3)
P 		17.7
(-3)
A 		18.8
(-2.7)
P 		22.2
(-1.7)
P 		20
C 43.5
(3)
P 		18
(-3)
A 		25.5
(-1.2)
P 		27.5
(-0.8)
P 		26
avr 43.3
(3) 		17.4
(-3) 		23.4
(-1.6) 		23.6
(-1.6) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 15.7
(-2.3)
P 		31.3
(3)
P 		25
(0.8)
P 		25
(0.8)
P 		13.8
(-3)
A 		15.7
(-2.3)
P 		18
B 31.5
(0.6)
P 		41.2
(3)
P 		16.9
(-3)
P 		31.4
(0.6)
P 		27
(-0.5)
A 		22.5
(-1.6)
P 		24
C 31
(3)
P 		27.1
(1.4)
P 		16.9
(-3)
P 		29.6
(2.4)
P 		18.8
(-2.2)
M 		16.8
(-3)
A 		14
avr 26.1
(0.1) 		33.2
(3) 		19.6
(-2.5) 		28.7
(1.2) 		19.9
(-2.4) 		18.3
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4431
Sequence Type Exemplar sequence
Representative Public ID E04F6.2 NCBI
Target Description E04F6.2 /REP_DB=WormBase Gene ID /WP=CE01214 /TR=Q19060 /GB=AAA68360.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063095(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063095 NCBI Caenorhabditis elegans E04F6.2 (E04F6.2) mRNA, complete cds. 11/11 None
SNAP00000032893 ENSEMBL cdna:SNAP chromosome:CEL140:II:7200562:7201784:1 10/11 None
GENEFINDER00000032914 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7200542:7201780:1 11/11 None
E04F6.2 ENSEMBL cdna:known chromosome:CEL140:II:7199364:7201784:1 gene:E04F6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7199359-7201780(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E04F6.2
Entrez Gene 184039 Entrez gene
SwissProt Q19060 EMBL-EBI
WormBase CE01214 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588294_AT similar to PARK2 co-regulated cfa
CANINE_2:CFA.12073.1.A1_AT similar to PARK2 co-regulated cfa
CANINE_2:CFAAFFX.2077.1.S1_AT similar to PARK2 co-regulated cfa
CANINE_2:CFAAFFX.2078.1.S1_S_AT similar to PARK2 co-regulated cfa
CANINE_2:CFAAFFX.2079.1.S1_AT similar to PARK2 co-regulated cfa
DROSOPHILA_2:1622894_AT dm
DROSGENOME1:147502_AT dm
CHICKEN:GGA.5620.2.S1_A_AT similar to PACRG gga
HU35KSUBC:RC_AA398695_AT PARK2 co-regulated hs
U133_X3P:HS.307438.0.S1_3P_AT PARK2 co-regulated hs
U133_X3P:HS.144339.0.S1_3P_AT PARK2 co-regulated hs
HG-U133A_2:214204_AT PARK2 co-regulated hs
HG-U133_PLUS_2:214204_AT PARK2 co-regulated hs
HG-U133A:214204_AT PARK2 co-regulated hs
HG-U133A_2:215472_AT PARK2 co-regulated hs
HG-U133_PLUS_2:215472_AT PARK2 co-regulated hs
HG-U133A:215472_AT PARK2 co-regulated hs
HG-U95AV2:37878_AT PARK2 co-regulated hs
HG-U95C:56939_AT PARK2 co-regulated hs
HG-U133_PLUS_2:234096_AT PARK2 co-regulated hs
HG-U133B:234096_AT PARK2 co-regulated hs
U133_X3P:HS.296744.0.S1_3P_X_AT PARK2 co-regulated hs
U133_X3P:HS.296744.0.S1_3P_AT PARK2 co-regulated hs
HG-U133_PLUS_2:243122_AT PARK2 co-regulated hs
HG-U133B:243122_AT PARK2 co-regulated hs
HG-U95C:50605_AT PARK2 co-regulated hs
HG-U95B:52676_AT PARK2 co-regulated hs
HU35KSUBB:RC_Z39094_AT PARK2 co-regulated hs
HU35KSUBC:RC_N66627_AT PARK2 co-regulated hs
U133_X3P:HS.25791.0.A1_3P_AT PARK2 co-regulated hs
MOUSE430A_2:1428751_AT Park2 co-regulated mm
MOE430A:1428751_AT Park2 co-regulated mm
MOUSE430_2:1428751_AT Park2 co-regulated mm
MG-U74AV2:160634_AT Park2 co-regulated mm
MU19KSUBC:TC40188_AT Adult male testis cDNA, RIKEN full-length enriched library, clone:1700008H23 product:hypothetical protein, full insert sequence mm
MU19KSUBC:TC40188_G_AT Adult male testis cDNA, RIKEN full-length enriched library, clone:1700008H23 product:hypothetical protein, full insert sequence mm
RG-U34B:RC_AI010950_AT similar to PACRG rn
RAE230B:1377721_AT similar to PACRG rn
RAT230_2:1377721_AT similar to PACRG rn
Protein Similarities
Method ID Description E-Value
blast AAA68360 Hypothetical protein E04F6.2 [Caenorhabditis elegans] ref|NP_495496.1| E04F6.2 [Caenorhabditis elegans] 0.0
blast AAA68360 Hypothetical protein E04F6.2 [Caenorhabditis elegans] ref|NP_495496.1| E04F6.2 [Caenorhabditis elegans] 1.0E-155
blast AAA68360 Hypothetical protein E04F6.2 [Caenorhabditis elegans] ref|NP_495496.1| E04F6.2 [Caenorhabditis elegans] 1.0E-152
blast CAE67564 Hypothetical protein CBG13091 [Caenorhabditis briggsae] emb|CAE56004.1| Hypothetical protein CBG23554 [Caenorhabditis briggsae] 1.0E-106
blast CAE67564 Hypothetical protein CBG13091 [Caenorhabditis briggsae] emb|CAE56004.1| Hypothetical protein CBG23554 [Caenorhabditis briggsae] 1.0E-103
blast EAA05183 ENSANGP00000008219 [Anopheles gambiae str. PEST] ref|XP_309337.2| ENSANGP00000008219 [Anopheles gambiae str. PEST] 2.0E-23
blast EAA05183 ENSANGP00000008219 [Anopheles gambiae str. PEST] ref|XP_309337.2| ENSANGP00000008219 [Anopheles gambiae str. PEST] 3.0E-23
Sequence
Target Sequence 
>C. ELEGANS:181830_AT
tcccagccgtaccagaagcgttgattctaatgtatctgatgactgcagtcaattccgagc
acttttctctcgtggagatcttcatgtcagaattattcattcaggaggagccggtgaaaa
acctcgggagttgcgttgggcaaaggatccatctcaaatgaaaaatgaaacaatttgtaa
tctacttgcaaagttctccacgggaatgtcacttttagatcatccatatcgctttgttgc
tgaaactggtataaccgatttgctcattgctcttcgaaatcatcaatcaattgtaacagt
tcttccacaattggttagaggaattcgagcagggctatattcttttgacattgaaaagaa
aaagttctgcttgaaaactctgtcaagaattactgcaatgcaaggaatcggtgcacaact
tgttcctttttacagacaattgctacctccacttcgaacagttcgccaatccagaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCAGCCGTACCAGAAGCGTTGAT 116 597 360 Antisense
ATGACTGCAGTCAATTCCGAGCACT 385 45 398 Antisense
TTCCGAGCACTTTTCTCTCGTGGAG 700 697 412 Antisense
CTACTTGCAAAGTTCTCCACGGGAA 633 225 541 Antisense
AGATCATCCATATCGCTTTGTTGCT 185 67 576 Antisense
CTGGTATAACCGATTTGCTCATTGC 524 239 605 Antisense
TGCTCATTGCTCTTCGAAATCATCA 662 579 620 Antisense
GAGCAGGGCTATATTCTTTTGACAT 146 387 686 Antisense
ATCGGTGCACAACTTGTTCCTTTTT 168 35 766 Antisense
TTTACAGACAATTGCTACCTCCACT 577 671 788 Antisense
TCGAACAGTTCGCCAATCCAGAAGT 544 601 813 Antisense
Sequence Source Affymetrix Proprietary Database