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[181829_at]

Description C43H8.1 /REP_DB=WormBase Gene ID /WP=CE19377 /TR=Q9TZN1 /GB=AAC67396.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 72      6grp_total > 72      4grp_total > 02      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1668
1 2 3 4 range
A 404.2
(-2.6)
P 		308.4
(-3)
P 		303.7
(-3)
P 		1971.7
(3)
P 		1668
B 331.1
(-3)
P 		318.6
(-3)
P 		327.1
(-3)
P 		1915.9
(3)
P 		1597
C 404.3
(-2.6)
P 		321.9
(-2.9)
P 		304.8
(-3)
P 		1938.1
(3)
P 		1633
avr 379.9
(-2.7) 		316.3
(-3) 		311.9
(-3) 		1941.9
(3) 		1630

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 353.3
(-3)
P 		355.9
(-2.9)
P 		513.4
(3)
P 		454.1
(0.8)
P 		413.7
(-0.7)
P 		356.4
(-2.9)
P 		160
B 392.2
(-3)
P 		457.1
(0.5)
P 		502.8
(3)
P 		455.5
(0.4)
P 		463.7
(0.9)
P 		406.9
(-2.2)
P 		111
C 417.4
(0.1)
P 		470.2
(3)
P 		361
(-3)
P 		465.7
(2.8)
P 		425.3
(0.5)
P 		403.3
(-0.7)
P 		109
avr 387.6
(-3) 		427.7
(0.4) 		459.1
(3) 		458.4
(2.9) 		434.2
(0.9) 		388.9
(-2.9) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 341
1 2 3 4 range
A 147.2
(-0.8)
P 		66.9
(-3)
P 		79.4
(-2.7)
P 		288.6
(3)
P 		222
B 105.6
(-2.5)
P 		78.7
(-2.9)
P 		75.8
(-3)
P 		408.3
(3)
P 		333
C 133.8
(-1.9)
P 		92.5
(-3)
P 		106.2
(-2.6)
P 		326.8
(3)
P 		234
avr 128.9
(-1.9) 		79.4
(-3) 		87.1
(-2.8) 		341.2
(3) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 65.1
(-3)
P 		126.6
(3)
P 		111.8
(1.6)
P 		115.2
(1.9)
P 		124.8
(2.8)
P 		86.8
(-0.9)
P 		62
B 136.5
(-1.6)
P 		152.1
(-0.2)
P 		122.1
(-2.9)
P 		120.6
(-3)
P 		188.4
(3)
P 		151.7
(-0.2)
P 		68
C 154.7
(3)
P 		143.5
(1.9)
P 		91.9
(-3)
P 		93.7
(-2.8)
P 		137.6
(1.4)
P 		135
(1.1)
P 		63
avr 118.8
(-1.5) 		140.7
(1.6) 		108.6
(-3) 		109.8
(-2.8) 		150.3
(3) 		124.5
(-0.7) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2420
Sequence Type Exemplar sequence
Representative Public ID C43H8.1 NCBI
Target Description C43H8.1 /REP_DB=WormBase Gene ID /WP=CE19377 /TR=Q9TZN1 /GB=AAC67396.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060377(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060377 NCBI Caenorhabditis elegans C43H8.1 (C43H8.1) mRNA, complete cds. 11/11 None
SNAP00000019934 ENSEMBL cdna:SNAP chromosome:CEL140:I:10632592:10633395:1 11/11 None
C43H8.1.1 ENSEMBL cdna:known chromosome:CEL140:I:10632583:10633498:1 gene:C43H8.1 11/11 None
C43H8.1.2 ENSEMBL cdna:known chromosome:CEL140:I:10632585:10636003:1 gene:C43H8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019940 5/11 Cross Hyb Matching Probes None
GENEFINDER00000019937 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10632522-10633326(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C43H8.1
Entrez Gene 183428 Entrez gene
SwissProt Q9TZN1 EMBL-EBI
WormBase CE19377 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597564_AT similar to zinc finger and BTB domain containing 8 opposite strand cfa
CANINE:1591649_AT similar to zinc finger and BTB domain containing 8 opposite strand cfa
CANINE_2:CFAAFFX.16496.1.S1_AT similar to zinc finger and BTB domain containing 8 opposite strand cfa
DROSOPHILA_2:1628796_AT dm
DROSGENOME1:150318_AT dm
CHICKEN:GGA.11904.1.S1_A_AT zinc finger and BTB domain containing 8 opposite strand gga
HU35KSUBA:W44356_AT zinc finger and BTB domain containing 8 opposite strand hs
HU35KSUBC:RC_AA490862_F_AT zinc finger and BTB domain containing 8 opposite strand hs
U133_X3P:HS.292812.0.A1_3P_AT zinc finger and BTB domain containing 8 opposite strand hs
HG-U133_PLUS_2:228970_AT zinc finger and BTB domain containing 8 opposite strand hs
HG-U133B:228970_AT zinc finger and BTB domain containing 8 opposite strand hs
HG-U95B:53123_S_AT zinc finger and BTB domain containing 8 opposite strand hs
HG-U95B:53124_R_AT zinc finger and BTB domain containing 8 opposite strand hs
HG-U95C:54519_R_AT Zinc finger and BTB domain containing 8 opposite strand hs
HU35KSUBD:RC_AA426618_AT Zinc finger and BTB domain containing 8 opposite strand hs
MOUSE430A_2:1452006_X_AT zinc finger and BTB domain containing 8 opposite strand mm
MOE430A:1452006_X_AT zinc finger and BTB domain containing 8 opposite strand mm
MOUSE430_2:1452006_X_AT zinc finger and BTB domain containing 8 opposite strand mm
MG-U74BV2:111900_AT zinc finger and BTB domain containing 8 opposite strand mm
MG-U74CV2:169720_I_AT zinc finger and BTB domain containing 8 opposite strand mm
MOE430A:1426266_S_AT zinc finger and BTB domain containing 8 opposite strand mm
MOUSE430A_2:1426266_S_AT zinc finger and BTB domain containing 8 opposite strand mm
MOUSE430_2:1426266_S_AT zinc finger and BTB domain containing 8 opposite strand mm
MOE430A:1426267_AT zinc finger and BTB domain containing 8 opposite strand mm
MOUSE430A_2:1426267_AT zinc finger and BTB domain containing 8 opposite strand mm
MOUSE430_2:1426267_AT zinc finger and BTB domain containing 8 opposite strand mm
MU19KSUBA:TC25411_AT Zinc finger and BTB domain containing 8 opposite strand (Zbtb8os), mRNA mm
RG-U34B:RC_AI008424_S_AT similar to archease rn
RG-U34C:RC_AI169317_AT similar to archease rn
RAE230A:1389907_AT similar to archease rn
RAT230_2:1389907_AT similar to archease rn
RAE230A:1389916_AT Similar to archease rn
RAT230_2:1389916_AT Similar to archease rn
RG-U34C:RC_AI072313_AT Similar to archease rn
Protein Similarities
Method ID Description E-Value
blast AAC67396 Hypothetical protein C43H8.1 [Caenorhabditis elegans] ref|NP_492778.1| C43H8.1 [Caenorhabditis elegans] 1.0E-87
blast CAE67058 Hypothetical protein CBG12466 [Caenorhabditis briggsae] 1.0E-79
blast XP_396222 PREDICTED: similar to CG6353-PA [Apis mellifera] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002804 EMBL-EBI Protein of unknown function DUF101 5.7E-74
Sequence
Target Sequence 
>C. ELEGANS:181829_AT
gaacgtcggcgattcgaatatctcgatcatccggcagatattcaacttcactcttgggga
tccacaatggaagaagccttcgaagcatgcctcgtatcaatgttcggctatatgacggat
ttggccaaggttgatgagatgtacgaattctactggaaagcttctggcgatagcttagat
ggtctcctatttcagtttctagacgaagcgctcaactcattccacgctgaaccatgcttt
gtcgcgaaacgggttgaaatattgcgatttgataagaaaaagtttgagatcgaattccga
ggatggggagaatcatttgatacttcaaagcatgaaacagaggctgatatcaagtctcca
acttattcaaacatgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTCGGCGATTCGAATATCTCG 89 349 52 Antisense
ATCCGGCAGATATTCAACTTCACTC 537 39 80 Antisense
AACTTCACTCTTGGGGATCCACAAT 550 139 95 Antisense
GGAAGAAGCCTTCGAAGCATGCCTC 360 531 120 Antisense
GCATGCCTCGTATCAATGTTCGGCT 43 311 136 Antisense
CTGGCGATAGCTTAGATGGTCTCCT 617 241 215 Antisense
ATGGTCTCCTATTTCAGTTTCTAGA 444 51 230 Antisense
GTTTCTAGACGAAGCGCTCAACTCA 93 451 246 Antisense
AACCATGCTTTGTCGCGAAACGGGT 506 147 281 Antisense
GAGGCTGATATCAAGTCTCCAACTT 461 405 391 Antisense
GTCTCCAACTTATTCAAACATGCAA 143 471 405 Antisense
Sequence Source Affymetrix Proprietary Database