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[181828_s_at]

Description F38E11.9 /REP_DB=WormBase Gene ID /WP=CE26625 /TR=Q20171 /GB=CAA92780.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 52      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 81      6grp_total > 63      4grp_total > 10      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 285
1 2 3 4 range
A 199.1
(-2.3)
P 		255.2
(-0.4)
P 		178.6
(-3)
P 		353.4
(3)
P 		175
B 218.6
(-3)
P 		245.6
(-2.3)
P 		223.7
(-2.9)
P 		454.1
(3)
P 		236
C 183.2
(-2.6)
P 		169.2
(-3)
P 		221.3
(-1.7)
P 		408.1
(3)
P 		239
avr 200.3
(-3) 		223.3
(-2.3) 		207.9
(-2.8) 		405.2
(3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 527
1 2 3 4 5 6 range
A 102.9
(-3)
P 		276.7
(0.4)
P 		405.6
(3)
P 		313
(1.2)
P 		254.4
(0)
P 		176.6
(-1.5)
P 		303
B 127.2
(-3)
P 		268.1
(-1.3)
P 		630.2
(3)
P 		298
(-1)
P 		190.1
(-2.2)
P 		188.6
(-2.3)
P 		503
C 156.1
(-3)
P 		285.1
(1.3)
P 		335.5
(3)
P 		261.7
(0.5)
P 		244.3
(-0.1)
P 		217.4
(-0.9)
P 		179
avr 128.7
(-3) 		276.6
(-0.3) 		457.1
(3) 		290.9
(-0) 		229.6
(-1.2) 		194.2
(-1.8) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 72.5
(3)
P 		55.4
(-1)
P 		46.7
(-3)
P 		51.7
(-1.8)
P 		26
B 69.7
(-0.6)
P 		60.7
(-1.8)
P 		51.8
(-3)
P 		96.8
(3)
P 		45
C 60.6
(-0.5)
P 		48.6
(-3)
P 		77.1
(3)
P 		68.8
(1.3)
P 		29
avr 67.6
(1.4) 		54.9
(-3) 		58.5
(-1.8) 		72.4
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 19
(-3)
P 		98.4
(3)
P 		88.3
(2.2)
P 		79.4
(1.6)
P 		76.8
(1.4)
P 		43
(-1.2)
P 		79
B 44.3
(-3)
P 		89.2
(-0.5)
P 		153
(3)
P 		78.9
(-1.1)
P 		77.2
(-1.2)
P 		70.3
(-1.6)
P 		109
C 57.9
(-2.1)
P 		87
(3)
P 		85.4
(2.7)
P 		52.6
(-3)
P 		79
(1.6)
P 		72.8
(0.5)
P 		34
avr 40.4
(-3) 		91.5
(1.5) 		108.9
(3) 		70.3
(-0.4) 		77.7
(0.3) 		62
(-1.1) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181828_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10190
Sequence Type Exemplar sequence
Representative Public ID F38E11.9 NCBI
Target Description F38E11.9 /REP_DB=WormBase Gene ID /WP=CE26625 /TR=Q20171 /GB=CAA92780.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069265 NCBI Caenorhabditis elegans F38E11.9 (F38E11.9) mRNA, complete cds. 11/11 None
F38E11.9 ENSEMBL cdna:known chromosome:CEL140:IV:9442882:9444010:-1 gene:F38E11.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009906 6/11 Cross Hyb Matching Probes None
SNAP00000022708 1/11 Cross Hyb Matching Probes None
GENEFINDER00000022724 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9442887-9444015(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38E11.9
Entrez Gene 177776 Entrez gene
SwissProt Q20171 EMBL-EBI
WormBase CE26625 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92780 Hypothetical protein F38E11.9 [Caenorhabditis elegans] emb|CAA92777.2| Hypothetical protein F38E11.9 [Caenorhabditis elegans] ref|NP_501666.1| F38E11.9 [Caenorhabditis elegans] 1.0E-173
blast AAF60371 Hypothetical protein C09E7.4 [Caenorhabditis elegans] ref|NP_498442.1| C09E7.4 [Caenorhabditis elegans] 2.0E-13
blast CAD91716 Hypothetical protein ZK1098.2 [Caenorhabditis elegans] ref|NP_001022983.1| ZK1098.2 [Caenorhabditis elegans] sp|P34601|YO62_CAEEL Hypothetical protein ZK1098.2 in chromosome III 3.0E-12
Sequence
Target Sequence 
>C. ELEGANS:181828_S_AT
gcacagctacaataatgctgcccgattgtataccagattatgaggacttgacatcagaaa
ttaccgatttctgtctgaaatcaggcttgccattttcattaatggcttcggaaaactttc
aaaattttttgaaaaatgtttgtcttaaaagtgggcatccggatgttgggaatattactt
tcccaactcgtgaaacaattcaaaattatatttgtgctgattatgagcacattattgaat
caattggccttaagattcgaaaaaaagtgaaatgcaaagaagctaatttgttaattgatc
ttggaaagtactaccatgattatctaaatgcccttgttctttacatggatgatggtttag
aaaaacttgaacttcaagttgttccgtatgctttcaaaatgacgtcatcatctaaatctg
caattcatatgaaagaattgttggttcaagctggagaaaaatttggtttatcaccggaag
acgtgacttcaatgacattgatatctgatgacactgaaaatatgaaaaataaattattga
aaaccatatggtcacttctcccaaaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACAGCTACAATAATGCTGCCCGA 651 315 299 Antisense
AATGCTGCCCGATTGTATACCAGAT 104 167 312 Antisense
AAATCAGGCTTGCCATTTTCATTAA 168 117 376 Antisense
AAGTGGGCATCCGGATGTTGGGAAT 306 159 447 Antisense
TATTACTTTCCCAACTCGTGAAACA 504 661 471 Antisense
GGAAAGTACTACCATGATTATCTAA 653 527 601 Antisense
GATTATCTAAATGCCCTTGTTCTTT 197 429 616 Antisense
ATGCCCTTGTTCTTTACATGGATGA 577 41 626 Antisense
ACTTCAAGTTGTTCCGTATGCTTTC 328 103 669 Antisense
CGTCATCATCTAAATCTGCAATTCA 528 245 701 Antisense
CCATATGGTCACTTCTCCCAAAAAG 35 271 842 Antisense
Sequence Source Affymetrix Proprietary Database