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[181826_at]

Description C50E3.9 /REP_DB=WormBase Gene ID /WP=CE08902 /TR=Q22929 /GB=AAB04884.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 18.4
(-3)
A 		24.5
(-2.4)
A 		52.2
(0.2)
A 		82.1
(3)
A 		64
B 55.4
(3)
A 		6.1
(-3)
A 		17.9
(-1.6)
A 		28.7
(-0.2)
A 		49
C 43.4
(-1.5)
A 		28.7
(-2.3)
A 		17.5
(-3)
A 		119.6
(3)
P 		102
avr 39.1
(-1) 		19.8
(-3) 		29.2
(-2) 		76.8
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 48.8
(3)
A 		4.7
(-3)
A 		45.2
(2.5)
A 		4.7
(-3)
A 		27
(0)
A 		22
(-0.6)
A 		44
B 25.8
(-1.7)
A 		50.3
(3)
A 		30.6
(-0.7)
A 		21.2
(-2.5)
A 		29.6
(-0.9)
A 		18.7
(-3)
A 		32
C 35
(-0.4)
A 		77.1
(3)
A 		51.3
(0.9)
A 		72.5
(2.6)
A 		19.8
(-1.7)
A 		3.4
(-3)
A 		74
avr 36.5
(1.5) 		44
(3) 		42.4
(2.7) 		32.8
(0.7) 		25.5
(-0.8) 		14.7
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 6.7
(-2)
A 		5.3
(-3)
A 		13.6
(3)
A 		12
(1.8)
A 		8
B 17.7
(3)
A 		1.5
(-3)
A 		4.1
(-2)
A 		6.1
(-1.3)
A 		16
C 14.4
(0.5)
A 		8.2
(-2.1)
A 		6.1
(-3)
A 		20.2
(3)
P 		14
avr 12.9
(3) 		5
(-3) 		7.9
(-0.8) 		12.8
(2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9
(2.4)
A 		1.7
(-2.7)
A 		9.8
(3)
A 		1.2
(-3)
A 		8.2
(1.9)
A 		5.4
(-0.1)
A 		9
B 9
(-1.2)
A 		16.7
(3)
A 		7.4
(-2)
A 		5.6
(-3)
A 		12
(0.5)
A 		7
(-2.2)
A 		11
C 13
(0.2)
A 		23.5
(3)
A 		13.1
(0.2)
A 		14.6
(0.6)
A 		6.4
(-1.6)
A 		1.1
(-3)
A 		22
avr 10.3
(0.7) 		14
(3) 		10.1
(0.5) 		7.1
(-1.4) 		8.9
(-0.2) 		4.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11803
Sequence Type Exemplar sequence
Representative Public ID C50E3.9 NCBI
Target Description C50E3.9 /REP_DB=WormBase Gene ID /WP=CE08902 /TR=Q22929 /GB=AAB04884.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072561 NCBI Caenorhabditis elegans C50E3.9 (C50E3.9) mRNA, complete cds. 11/11 None
GENEFINDER00000028555 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7601586:7604135:-1 11/11 None
C50E3.9 ENSEMBL cdna:known chromosome:CEL140:V:7601849:7603016:-1 gene:C50E3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7601849-7603017(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.9
Entrez Gene 183661 Entrez gene
SwissProt Q22929 EMBL-EBI
WormBase CE08902 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504962 C50E3.9 [Caenorhabditis elegans] gb|AAB04884.1| Hypothetical protein C50E3.9 [Caenorhabditis elegans] 0.0
blast NP_504963 C50E3.10 [Caenorhabditis elegans] gb|AAB04885.1| Hypothetical protein C50E3.10 [Caenorhabditis elegans] 1.0E-112
blast NP_504962 C50E3.9 [Caenorhabditis elegans] gb|AAB04884.1| Hypothetical protein C50E3.9 [Caenorhabditis elegans] 1.0E-102
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 1.0E-60
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 3.0E-19
blast CAE74788 Hypothetical protein CBG22619 [Caenorhabditis briggsae] 5.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504962.1 7 20-42,101-123,143-165,180-202,221-243,263-285,306-328
C50E3.9 7 20-42,101-123,143-165,180-202,221-243,263-285,306-328
GENEFINDER00000028555 6 217-239,254-276,295-317,337-359,380-402,417-439
Sequence
Target Sequence 
>C. ELEGANS:181826_AT
attagcatgttatctctctcttgttctattggtgttcgaattcttttctcaactgttgca
atctgtattagtttggtatatggaagtaaaccctcgctgataaaatcaattgttttgcaa
ctatccctttatctagactactgttgtcattttttctccattgcaatttcatttgtcata
acgctcaactacttttattattgtacattccggaactggcattcccgtaatttcaaattc
cataaatttggagttttaatttttacttttttattttcgattatctgtgcaatgtcttca
atacttacttctcaaattgaaagaatatttcaatgcaaatttgggtttttggattttgga
aaaaatgagaatatccaaatgataatcaaccgagtgactttgatatttccttgtgtgtct
ctcatcattgggtaccttattttccgtatgtctctcaagaaacgaacgagtggggctgca
aatcatagcaaatgcaaagaaaaaattgttttgcctatttttgtaactaccctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAGCATGTTATCTCTCTCTTGTT 472 13 424 Antisense
CGAATTCTTTTCTCAACTGTTGCAA 186 253 460 Antisense
ATGGAAGTAAACCCTCGCTGATAAA 706 51 503 Antisense
TTGTTTTGCAACTATCCCTTTATCT 353 689 533 Antisense
TTGTCATAACGCTCAACTACTTTTA 79 677 596 Antisense
CATTCCGGAACTGGCATTCCCGTAA 332 217 629 Antisense
GCAATGTCTTCAATACTTACTTCTC 15 323 712 Antisense
TTTGATATTTCCTTGTGTGTCTCTC 553 667 822 Antisense
TGTGTGTCTCTCATCATTGGGTACC 351 555 835 Antisense
GGTACCTTATTTTCCGTATGTCTCT 189 505 854 Antisense
TGCCTATTTTTGTAACTACCCTGGT 312 579 935 Antisense
Sequence Source Affymetrix Proprietary Database