[Home] | [Total List]

[181825_at]

Description F17H10.4 /REP_DB=WormBase Gene ID /WP=CE05658 /TR=Q19533 /GB=CAA93651.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 8.7
(2.9)
A 		8.8
(3)
A 		4.8
(-0.6)
A 		2.2
(-3)
A 		7
B 6.9
(-1.8)
A 		17
(3)
A 		4.4
(-3)
A 		5.2
(-2.6)
A 		13
C 24.9
(3)
A 		10.6
(-0.7)
A 		5
(-2.2)
A 		1.9
(-3)
A 		23
avr 13.5
(3) 		12.1
(2.2) 		4.7
(-2.1) 		3.1
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 51
(3)
A 		5.5
(-2.8)
A 		3.7
(-3)
A 		4.6
(-2.9)
A 		31.4
(0.5)
A 		3.9
(-3)
A 		47
B 4.1
(0.9)
A 		2.1
(-2.5)
A 		5.3
(3)
A 		4.9
(2.3)
A 		4.2
(1.1)
A 		1.8
(-3)
A 		4
C 4.2
(3)
A 		1.8
(-3)
A 		1.8
(-3)
A 		2.7
(-0.8)
A 		3.2
(0.5)
A 		3.6
(1.5)
A 		2
avr 19.8
(3) 		3.1
(-3) 		3.6
(-2.8) 		4.1
(-2.6) 		12.9
(0.5) 		3.1
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.2
(3)
A 		1.9
(0.3)
A 		1.2
(-1.1)
A 		0.3
(-3)
A 		3
B 2.2
(-0.8)
A 		4.2
(3)
A 		1
(-3)
A 		1.1
(-2.8)
A 		3
C 8.3
(3)
A 		3
(-1)
A 		1.7
(-2)
A 		0.3
(-3)
A 		8
avr 4.6
(3) 		3
(0.6) 		1.3
(-2) 		0.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 9.4
(2.9)
A 		2
(-2.2)
A 		0.8
(-3)
A 		1.2
(-2.7)
A 		9.5
(3)
A 		0.9
(-2.9)
A 		9
B 1.4
(1.2)
A 		0.7
(-3)
A 		1.3
(0.6)
A 		1.3
(0.6)
A 		1.7
(3)
A 		0.7
(-3)
A 		1
C 1.6
(3)
A 		0.6
(-2.5)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1
(-0.3)
A 		1.2
(0.8)
A 		1
avr 4.1
(3) 		1.1
(-2.6) 		0.9
(-3) 		1
(-2.8) 		4.1
(3) 		0.9
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17444
Sequence Type Exemplar sequence
Representative Public ID F17H10.4 NCBI
Target Description F17H10.4 /REP_DB=WormBase Gene ID /WP=CE05658 /TR=Q19533 /GB=CAA93651.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077779 NCBI Caenorhabditis elegans F17H10.4 (F17H10.4) mRNA, complete cds. 11/11 None
F17H10.4 ENSEMBL cdna:known chromosome:CEL140:X:13125895:13126439:-1 gene:F17H10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13125894-13126439(-) 94.93 100.0
Public Domain and Genome References
Gene Title
Ensembl F17H10.4
Entrez Gene 184625 Entrez gene
SwissProt Q19533 EMBL-EBI
WormBase CE05658 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93651 Hypothetical protein F17H10.4 [Caenorhabditis elegans] ref|NP_510180.1| F17H10.4 [Caenorhabditis elegans] 3.0E-63
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510180.1 2 38-60,109-131
F17H10.4 2 38-60,109-131
Sequence
Target Sequence 
>C. ELEGANS:181825_AT
ttctccaattttgcggtcagctcaatcgttcaacattgatcaaatcaatcaaatcaacgc
cttcttctcatcgactgccggcattgtcaccttttccgccgtctggctcttctgcgttgt
tgcactgtttcttgtcaccggatggcttctcactaggcacgaggaggagaaccgcacaaa
tccggagcttgcccagagctcccaaccatcagtggtaacgaatatcctggaagatatcat
cgctttctctagtaatttaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCAATTTTGCGGTCAGCTCAA 656 691 42 Antisense
CGGTCAGCTCAATCGTTCAACATTG 39 245 55 Antisense
AATCAATCAAATCAACGCCTTCTTC 522 171 84 Antisense
TCTTCTGCGTTGTTGCACTGTTTCT 597 617 149 Antisense
TGGCTTCTCACTAGGCACGAGGAGG 582 543 184 Antisense
GGCACGAGGAGGAGAACCGCACAAA 205 535 197 Antisense
AGAACCGCACAAATCCGGAGCTTGC 540 73 209 Antisense
AGAGCTCCCAACCATCAGTGGTAAC 706 69 236 Antisense
AGTGGTAACGAATATCCTGGAAGAT 165 59 252 Antisense
GGAAGATATCATCGCTTTCTCTAGT 583 531 270 Antisense
ATCGCTTTCTCTAGTAATTTAACAT 544 37 280 Antisense
Sequence Source Affymetrix Proprietary Database