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[181824_s_at]

Description F32A11.1 /REP_DB=WormBase Gene ID /WP=CE17737 /TR=O62198 /GB=CAB04226.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_high_8_8 > 50      6grp_highest_nonorm > 31      6grp_total > 07      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1507
1 2 3 4 range
A 1893
(3)
P 		1082.1
(-0.3)
P 		1234.1
(0.4)
P 		399.3
(-3)
M 		1494
B 1426.5
(3)
P 		1240.1
(1.8)
P 		1229.3
(1.7)
P 		511
(-3)
P 		916
C 1906
(3)
P 		1514.5
(1.3)
P 		1477.7
(1.1)
P 		547.2
(-3)
P 		1359
avr 1741.8
(3) 		1278.9
(0.8) 		1313.7
(1) 		485.8
(-3) 		1256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1364
1 2 3 4 5 6 range
A 1010.6
(-0.3)
P 		1443
(3)
P 		803.1
(-1.9)
P 		1046.9
(-0)
P 		653.5
(-3)
P 		911.6
(-1)
P 		790
B 1144.5
(3)
P 		789
(-1.1)
P 		846
(-0.5)
P 		747.6
(-1.6)
P 		625.8
(-3)
P 		709.6
(-2)
P 		519
C 1989.7
(3)
P 		838
(-2.2)
P 		1223.4
(-0.4)
P 		823.3
(-2.3)
P 		1049.9
(-1.2)
P 		656.7
(-3)
P 		1333
avr 1381.6
(3) 		1023.3
(-0.5) 		957.5
(-1.1) 		872.6
(-1.9) 		776.4
(-2.8) 		759.3
(-3) 		622
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 631
1 2 3 4 range
A 689.2
(3)
P 		234.9
(-1.3)
P 		322.6
(-0.5)
P 		58.5
(-3)
M 		631
B 454.9
(3)
P 		306.3
(0.4)
P 		284.9
(0.1)
P 		108.9
(-3)
P 		346
C 630.9
(3)
P 		435.4
(0.8)
P 		515
(1.7)
P 		92.3
(-3)
P 		539
avr 591.7
(3) 		325.5
(-0.2) 		374.2
(0.4) 		86.6
(-3) 		505

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 572
1 2 3 4 5 6 range
A 186.3
(-2.8)
P 		513.2
(3)
P 		174.9
(-3)
P 		265.5
(-1.4)
P 		197.2
(-2.6)
P 		221.9
(-2.2)
P 		338
B 398.2
(3)
P 		262.6
(-1.1)
P 		205.4
(-2.8)
P 		198
(-3)
P 		254.3
(-1.3)
P 		264.6
(-1)
P 		200
C 737.5
(3)
P 		255.7
(-2.1)
P 		311.4
(-1.5)
P 		165.6
(-3)
P 		339.7
(-1.2)
P 		219.8
(-2.4)
P 		572
avr 440.7
(3) 		343.8
(0.5) 		230.6
(-2.5) 		209.7
(-3) 		263.7
(-1.6) 		235.4
(-2.3) 		231
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181824_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2965
Sequence Type Exemplar sequence
Representative Public ID F32A11.1 NCBI
Target Description F32A11.1 /REP_DB=WormBase Gene ID /WP=CE17737 /TR=O62198 /GB=CAB04226.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064393 NCBI Caenorhabditis elegans F32A11.1 (F32A11.1) mRNA, complete cds. 11/11 A 
SNAP00000006597 ENSEMBL cdna:SNAP chromosome:CEL140:II:13157235:13159991:1 11/11 None
GENEFINDER00000006605 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13157235:13159991:1 11/11 None
F32A11.1 ENSEMBL cdna:known chromosome:CEL140:II:13157231:13160300:1 gene:F32A11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13157231-13159988(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32A11.1
Entrez Gene 174959 Entrez gene
SwissProt O62198 EMBL-EBI
WormBase CE17737 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04226 Hypothetical protein F32A11.1 [Caenorhabditis elegans] ref|NP_496794.1| F32A11.1 [Caenorhabditis elegans] 1.0E-166
blast CAE59437 Hypothetical protein CBG02810 [Caenorhabditis briggsae] 1.0E-159
blast CAB04956 Hypothetical protein W09H1.3 [Caenorhabditis elegans] ref|NP_496798.1| W09H1.3 [Caenorhabditis elegans] 2.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496794.1 1 38-57
F32A11.1 1 38-57
SNAP00000006597 1 38-57
GENEFINDER00000006605 1 38-57
Sequence
Target Sequence 
>C. ELEGANS:181824_S_AT
tgaggcttaccaataaacccgtcacttttaccgttattaaggacgtagaaggagctccgg
acgctgtagacgccgatgttaccgtcaaaagaacagcatttggccgtactaatctcaatc
tggaagttgtccgccgaggctatgcccgtgtcccagctccggatcaagttaagcatttga
agtcgctgcagacgattccggcttactccaggcttattagtaggcttcttatgagtgaaa
aggttgccgatcgtagaggagtcggagtatgggagcgtgatacatgggtggaatccgtgc
agtcgtacccatcgcaagtgacaggaattattcgttcagccgctattaccaaggctgtgg
ttctgctctacaacgtgacaaaagacgtgattctctacggagtgaagttgactcaacaga
cctattacgtagtcttggcgattgctgctcacatgcaaaatggctatcgacgattcgcgt
caggagtggaccggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGCTTACCAATAAACCCGTCAC 179 555 434 Antisense
TCCGGACGCTGTAGACGCCGATGTT 559 593 489 Antisense
AACAGCATTTGGCCGTACTAATCTC 674 135 525 Antisense
GTCCCAGCTCCGGATCAAGTTAAGC 311 475 583 Antisense
TGAAGTCGCTGCAGACGATTCCGGC 702 573 611 Antisense
GGGTGGAATCCGTGCAGTCGTACCC 691 497 719 Antisense
TCGTACCCATCGCAAGTGACAGGAA 33 605 736 Antisense
GAATTATTCGTTCAGCCGCTATTAC 484 179 758 Antisense
TACCAAGGCTGTGGTTCTGCTCTAC 315 651 780 Antisense
TCTTGGCGATTGCTGCTCACATGCA 251 619 866 Antisense
CGATTCGCGTCAGGAGTGGACCGGC 424 247 904 Antisense
Sequence Source Affymetrix Proprietary Database