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[181823_s_at]

Description C56E6.3 /REP_DB=WormBase Gene ID /WP=CE04275 /TR=Q18897 /GB=AAA81089.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 91      6grp_total > 78      4grp_total > 62      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 160.7
(3)
P 		114.4
(-1.1)
P 		160.7
(3)
P 		93
(-3)
P 		68
B 156.5
(3)
P 		142.9
(1.6)
P 		116.5
(-1)
P 		96.8
(-3)
P 		60
C 152.4
(3)
P 		92.5
(-2.7)
P 		122.5
(0.2)
P 		89.4
(-3)
P 		63
avr 156.5
(3) 		116.6
(-0.8) 		133.2
(0.8) 		93.1
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 138
(-2.1)
P 		97.4
(-3)
P 		95.2
(-3)
P 		134.1
(-2.2)
P 		226.6
(-0.2)
P 		373.3
(3)
P 		278
B 124.1
(-2.9)
P 		122.6
(-2.9)
P 		117.3
(-3)
P 		159.6
(-2.1)
P 		221.9
(-0.8)
P 		406.4
(3)
P 		289
C 119.3
(-2.6)
P 		143.1
(-2.1)
P 		95.7
(-3)
P 		146.9
(-2.1)
P 		230.9
(-0.5)
P 		419.9
(3)
P 		324
avr 127.1
(-2.5) 		121
(-2.6) 		102.7
(-3) 		146.9
(-2.1) 		226.5
(-0.5) 		399.9
(3) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 58.5
(3)
P 		24.8
(-1.5)
P 		42
(0.8)
P 		13.6
(-3)
P 		45
B 49.9
(3)
P 		35.3
(0)
P 		27
(-1.7)
P 		20.6
(-3)
P 		29
C 50.4
(3)
P 		26.6
(-1)
P 		42.7
(1.7)
P 		15.1
(-3)
P 		35
avr 52.9
(3) 		28.9
(-0.9) 		37.2
(0.4) 		16.4
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 25.4
(-2.6)
P 		34.6
(-1.8)
P 		20.7
(-3)
P 		34
(-1.9)
P 		68.4
(1.1)
P 		90.9
(3)
P 		70
B 43.2
(-2.3)
P 		40.8
(-2.4)
P 		28.5
(-3)
P 		42.3
(-2.3)
P 		90.2
(0)
P 		151.5
(3)
P 		123
C 44.2
(-2)
P 		43.7
(-2)
P 		24.4
(-3)
P 		29.5
(-2.7)
P 		74.7
(-0.4)
P 		140.6
(3)
P 		116
avr 37.6
(-2.2) 		39.7
(-2.1) 		24.5
(-3) 		35.3
(-2.4) 		77.8
(0.1) 		127.7
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181823_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5182
Sequence Type Exemplar sequence
Representative Public ID C56E6.3 NCBI
Target Description C56E6.3 /REP_DB=WormBase Gene ID /WP=CE04275 /TR=Q18897 /GB=AAA81089.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026871(11), NM_001026872(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026871 NCBI Caenorhabditis elegans C56E6.3a (C56E6.3) mRNA, complete cds. 11/11 None
NM_001026872 NCBI Caenorhabditis elegans C56E6.3b (C56E6.3) mRNA, complete cds. 11/11 None
SNAP00000033857 ENSEMBL cdna:SNAP chromosome:CEL140:II:6517357:6519607:-1 11/11 None
GENEFINDER00000033869 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6517357:6519607:-1 11/11 None
C56E6.3a ENSEMBL cdna:known chromosome:CEL140:II:6517136:6519791:-1 gene:C56E6.3 11/11 None
C56E6.3b ENSEMBL cdna:known chromosome:CEL140:II:6517177:6519607:-1 gene:C56E6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6517353-6519604(-) 100.0 100.0
Public Domain and Genome References
Ensembl C56E6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81089 Hypothetical protein C56E6.3a [Caenorhabditis elegans] ref|NP_001022042.1| C56E6.3a [Caenorhabditis elegans] 0.0
blast AAU20848 Hypothetical protein C56E6.3b [Caenorhabditis elegans] ref|NP_001022043.1| C56E6.3b [Caenorhabditis elegans] 0.0
blast CAE59337 Hypothetical protein CBG02682 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:181823_S_AT
cgacggcagtcatgtacatcttcttgatggttcctcatcctatacgcaagacgatcgacc
aacttgtgcagtggctacaacttactatgcgaacggatgcagtggaagatcttagaagtc
catattatttggggaaaaaggatccacggagatacaaagagaatgtgaatgtcataattg
gagagctgtcttcttttattttcccgagaggatgtatgacaaatgttcaacaagacattt
tcatcgagaccctcgttgaactgcgacaaaaaggaaaactaggtcaacgcccggcacaat
tggaaagctctcttcgagcaaagtcagtaaatggacaaattaaatggcaacgaaaagaga
gaaaacacaattcgcttgaaggtgacctgacaccagtgagatatacagttcgaagagaat
caattcgttcaaaaacttcgaaaagtaaagatggactgaatgagactgactcagcactgg
taacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGGCAGTCATGTACATCTTCTT 219 251 1274 Antisense
CATCTTCTTGATGGTTCCTCATCCT 344 213 1290 Antisense
TCCTCATCCTATACGCAAGACGATC 371 591 1305 Antisense
AGACGATCGACCAACTTGTGCAGTG 503 71 1322 Antisense
GTGGCTACAACTTACTATGCGAACG 661 491 1344 Antisense
ATTGGAGAGCTGTCTTCTTTTATTT 622 3 1450 Antisense
AGACATTTTCATCGAGACCCTCGTT 57 73 1506 Antisense
AGACCCTCGTTGAACTGCGACAAAA 260 71 1520 Antisense
AACGCCCGGCACAATTGGAAAGCTC 366 145 1559 Antisense
ACAATTCGCTTGAAGGTGACCTGAC 608 113 1640 Antisense
GAGACTGACTCAGCACTGGTAACCA 19 395 1735 Antisense
Sequence Source Affymetrix Proprietary Database