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[181822_at]

Description D1022.2 /REP_DB=WormBase Gene ID /WP=CE02576 /TR=Q18928 /GB=AAB93335.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 21.2
(-2.8)
A 		38.9
(2.2)
A 		20.6
(-3)
A 		41.6
(3)
A 		21
B 27.3
(-2.2)
A 		18.6
(-3)
A 		43.8
(-0.7)
A 		85.3
(3)
A 		67
C 21.4
(-2.5)
A 		28
(-1.1)
A 		19.3
(-3)
A 		46.1
(3)
A 		27
avr 23.3
(-3) 		28.5
(-2.1) 		27.9
(-2.2) 		57.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 69.8
(3)
A 		32
(-0.5)
A 		57.5
(1.9)
A 		4.1
(-3)
A 		43
(0.6)
A 		13.3
(-2.2)
A 		66
B 44.3
(3)
A 		13.1
(-2.4)
A 		12.2
(-2.5)
A 		44.4
(3)
A 		29
(0.4)
A 		9.5
(-3)
A 		35
C 4.3
(-3)
A 		16.5
(-0.6)
A 		35.3
(3)
A 		29.7
(1.9)
A 		9.8
(-1.9)
A 		4.4
(-3)
A 		31
avr 39.5
(3) 		20.5
(-0.8) 		35
(2.1) 		26.1
(0.4) 		27.3
(0.6) 		9.1
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 7.7
(1.6)
A 		8.4
(3)
A 		5.4
(-3)
A 		6.1
(-1.6)
A 		3
B 8.7
(-1.2)
A 		4.6
(-3)
A 		10.1
(-0.6)
A 		18.2
(3)
A 		14
C 7.1
(-1.2)
A 		8
(3)
A 		6.7
(-3)
A 		7.8
(2.1)
A 		1
avr 7.8
(-1.7) 		7
(-3) 		7.4
(-2.4) 		10.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 12.9
(3)
A 		11.4
(2.2)
A 		12.5
(2.8)
A 		1
(-3)
A 		13
(3)
A 		3.2
(-1.9)
A 		12
B 15.4
(3)
A 		4.4
(-2.3)
A 		3
(-3)
A 		11.8
(1.3)
A 		11.8
(1.3)
A 		3.6
(-2.7)
A 		12
C 1.6
(-2.9)
A 		5
(-0.2)
A 		9
(3)
A 		6
(0.6)
A 		3.2
(-1.6)
A 		1.5
(-3)
A 		8
avr 10
(3) 		6.9
(0.4) 		8.2
(1.5) 		6.3
(-0.1) 		9.3
(2.4) 		2.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181822_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5028
Sequence Type Exemplar sequence
Representative Public ID D1022.2 NCBI
Target Description D1022.2 /REP_DB=WormBase Gene ID /WP=CE02576 /TR=Q18928 /GB=AAB93335.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063162 NCBI Caenorhabditis elegans D1022.2 (D1022.2) mRNA, complete cds. 11/11 None
SNAP00000004646 ENSEMBL cdna:SNAP chromosome:CEL140:II:7459464:7459954:1 11/11 None
GENEFINDER00000004656 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7459488:7459954:1 10/11 None
D1022.2 ENSEMBL cdna:known chromosome:CEL140:II:7459464:7459954:1 gene:D1022.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7459460-7459951(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1022.2
Entrez Gene 183899 Entrez gene
SwissProt Q18928 EMBL-EBI
WormBase CE02576 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495563 D1022.2 [Caenorhabditis elegans] gb|AAB93335.1| Hypothetical protein D1022.2 [Caenorhabditis elegans] 4.0E-72
blast NP_495563 D1022.2 [Caenorhabditis elegans] gb|AAB93335.1| Hypothetical protein D1022.2 [Caenorhabditis elegans] 4.0E-67
blast CAE67533 Hypothetical protein CBG13056 [Caenorhabditis briggsae] 1.0E-40
blast CAE67533 Hypothetical protein CBG13056 [Caenorhabditis briggsae] 9.0E-40
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495563.1 1 13-35
D1022.2 1 13-35
SNAP00000004646 1 13-35
GENEFINDER00000004656 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:181822_AT
ttgaaacccctcgtcatatgtcattcgaaagaaacatgcttctggtattttctcttctta
tttcatttgtggctgcaaccatagctcaagcttctccacaacttcaagttgaatgtgaca
ttgttccagtgactgaatgtccagtaacatgtggtggaggttggcaacttatgaagtacg
catgcgtggagaagaccgacaattgtgcatgcccgaaaaatcccattaaatatcaatgca
acaaccgtccttgtcttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAAACCCCTCGTCATATGTCATT 632 703 20 Antisense
AGAAACATGCTTCTGGTATTTTCTC 405 73 49 Antisense
CTCTTCTTATTTCATTTGTGGCTGC 94 231 71 Antisense
TGGCTGCAACCATAGCTCAAGCTTC 517 545 89 Antisense
CAAGCTTCTCCACAACTTCAAGTTG 75 187 106 Antisense
GAATGTGACATTGTTCCAGTGACTG 249 333 130 Antisense
ACATGTGGTGGAGGTTGGCAACTTA 213 105 166 Antisense
GTACGCATGCGTGGAGAAGACCGAC 305 457 195 Antisense
GAAGACCGACAATTGTGCATGCCCG 589 339 210 Antisense
GTGCATGCCCGAAAAATCCCATTAA 501 479 224 Antisense
CAATGCAACAACCGTCCTTGTCTTG 148 183 253 Antisense
Sequence Source Affymetrix Proprietary Database