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[181820_at]

Description T05C7.1 /REP_DB=WormBase Gene ID /WP=CE18204 /TR=O76362 /GB=AAC19187.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 51      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 134.6
(2.6)
A 		137.4
(3)
A 		108.9
(-1.2)
A 		96.7
(-3)
A 		41
B 97.3
(0.2)
A 		154.6
(3)
A 		105.9
(0.6)
A 		33.1
(-3)
A 		122
C 111.7
(-0.9)
A 		189
(3)
A 		109.5
(-1)
A 		69.7
(-3)
A 		119
avr 114.5
(0.1) 		160.3
(3) 		108.1
(-0.3) 		66.5
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 41.6
(-1.2)
A 		95.1
(3)
A 		19.3
(-3)
A 		78.8
(1.7)
A 		84.2
(2.1)
A 		27.4
(-2.4)
A 		76
B 64.6
(3)
A 		59.9
(2.4)
A 		58.9
(2.2)
A 		31.8
(-1.5)
A 		21.1
(-3)
A 		61.7
(2.6)
A 		44
C 31.7
(-3)
A 		64.8
(-0.5)
A 		35.5
(-2.7)
A 		111.7
(3)
A 		108.6
(2.8)
A 		60.7
(-0.8)
A 		80
avr 46
(-1.7) 		73.3
(2.9) 		37.9
(-3) 		74.1
(3) 		71.3
(2.5) 		49.9
(-1) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 49
(3)
A 		29.8
(-0.3)
A 		28.5
(-0.5)
A 		14.2
(-3)
A 		35
B 31
(1.6)
A 		38.2
(3)
A 		24.5
(0.4)
A 		7
(-3)
A 		31
C 37
(0.6)
A 		54.3
(3)
A 		38.2
(0.7)
A 		11.7
(-3)
A 		43
avr 39
(2.6) 		40.8
(3) 		30.4
(0.9) 		11
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 7.7
(-2.3)
A 		33.8
(3)
A 		4.2
(-3)
A 		20
(0.2)
A 		25.4
(1.3)
A 		6.7
(-2.5)
A 		30
B 22.5
(2.8)
A 		19.9
(1.7)
A 		14.3
(-0.6)
A 		8.4
(-3)
A 		8.6
(-2.9)
A 		23
(3)
A 		15
C 11.8
(-2.4)
A 		19.8
(-0.5)
A 		9
(-3)
A 		22.5
(0.1)
A 		35.1
(3)
A 		20.3
(-0.4)
A 		26
avr 14
(-1.1) 		24.5
(3) 		9.2
(-3) 		17
(0.1) 		23
(2.4) 		16.7
(-0.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181820_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10624
Sequence Type Exemplar sequence
Representative Public ID T05C7.1 NCBI
Target Description T05C7.1 /REP_DB=WormBase Gene ID /WP=CE18204 /TR=O76362 /GB=AAC19187.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067457(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067457 NCBI Caenorhabditis elegans T05C7.1 (T05C7.1) mRNA, complete cds. 11/11 None
SNAP00000022363 ENSEMBL cdna:SNAP chromosome:CEL140:IV:45826:48844:-1 11/11 None
GENEFINDER00000022364 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:46363:48844:-1 11/11 None
T05C7.1 ENSEMBL cdna:known chromosome:CEL140:IV:47678:48844:-1 gene:T05C7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:47690-48844(-) 97.61 97.61
Public Domain and Genome References
Gene Title
Ensembl T05C7.1
Entrez Gene 188120 Entrez gene
SwissProt O76362 EMBL-EBI
WormBase CE18204 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32952 hypothetical protein C15E6.1 - Caenorhabditis elegans 1.0E-124
blast AAF60494 Ferm domain (protein4.1-ezrin-radixin-moesin) family protein 5 [Caenorhabditis elegans] ref|NP_499856.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-5) [Caenorhabditis elegans] 1.0E-122
blast AAF60499 Hypothetical protein Y38C1AB.4 [Caenorhabditis elegans] ref|NP_499850.1| Y38C1AB.4 [Caenorhabditis elegans] 1.0E-122
blast AAC19187 Hypothetical protein T05C7.1 [Caenorhabditis elegans] ref|NP_499858.1| T05C7.1 [Caenorhabditis elegans] 8.0E-87
blast AAC19187 Hypothetical protein T05C7.1 [Caenorhabditis elegans] ref|NP_499858.1| T05C7.1 [Caenorhabditis elegans] 1.0E-72
blast T32952 hypothetical protein C15E6.1 - Caenorhabditis elegans 1.0E-72
blast AAF60494 Ferm domain (protein4.1-ezrin-radixin-moesin) family protein 5 [Caenorhabditis elegans] ref|NP_499856.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-5) [Caenorhabditis elegans] 1.0E-70
Sequence
Target Sequence 
>C. ELEGANS:181820_AT
tgcccgctgctcaagaagttcaaatcagtattgcagaagtcattgaggtccgcggttacg
ggctcaatgcaccggagctcttatcagttgccgtatcggctgccgatcgtctaccaccat
gtccaaaaggaaccgttttcgatacggaaaacgtttttctgaatagtaaaggagagcttg
tgatcaaaacagtcgccacatcccgtgtagatcgttcctttgtccctcctgaatgggcaa
aaggcgaagaagatgcccaagcggctgccgtgtactgcctcggagctgtgctccgagctg
ctggagccgaagaagccgctgatgtcgatctcttctcattggtcaatattttgactgtag
cgatgaccggcacaaggccgacggctcatagaatgggacaaatggccaggaaccaactac
gtggcagagatccagcttcgatgctta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCCGCTGCTCAAGAAGTTCAAAT 139 585 14 Antisense
AGAAGTCATTGAGGTCCGCGGTTAC 388 73 48 Antisense
GGTTACGGGCTCAATGCACCGGAGC 116 507 67 Antisense
GCACCGGAGCTCTTATCAGTTGCCG 502 315 82 Antisense
ATCAGTTGCCGTATCGGCTGCCGAT 652 27 96 Antisense
TCGTCTACCACCATGTCCAAAAGGA 391 599 120 Antisense
TCCTTTGTCCCTCCTGAATGGGCAA 59 591 229 Antisense
CTGTGCTCCGAGCTGCTGGAGCCGA 165 241 299 Antisense
AAGAAGCCGCTGATGTCGATCTCTT 280 153 323 Antisense
TCGATCTCTTCTCATTGGTCAATAT 479 603 338 Antisense
GGCAGAGATCCAGCTTCGATGCTTA 371 535 436 Antisense
Sequence Source Affymetrix Proprietary Database