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[181819_s_at]

Description Y37D8A.4 /REP_DB=WormBase Gene ID /WP=CE20209 /TR=Q9XWW5 /GB=CAA21524.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 95      6grp_total > 88      4grp_total > 12      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1383
1 2 3 4 range
A 761.1
(-0.1)
P 		251
(-3)
P 		302.4
(-2.7)
P 		1302.9
(3)
P 		1052
B 625.3
(-1.3)
P 		404.2
(-2.3)
P 		245.7
(-3)
P 		1619.9
(3)
P 		1374
C 784.6
(-0.9)
P 		440.4
(-2.6)
P 		345
(-3)
P 		1628.7
(3)
P 		1284
avr 723.7
(-0.9) 		365.2
(-2.7) 		297.7
(-3) 		1517.2
(3) 		1220

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 768
1 2 3 4 5 6 range
A 387
(-3)
P 		773.7
(0.8)
P 		661.9
(-0.3)
P 		567.3
(-1.2)
P 		953.8
(2.6)
P 		994
(3)
P 		607
B 528.8
(-3)
P 		645.1
(-1.8)
P 		797.4
(-0.3)
P 		542.9
(-2.9)
P 		1004.6
(1.9)
P 		1117.2
(3)
P 		588
C 435.4
(-3)
P 		788.5
(-0.1)
P 		705.3
(-0.8)
P 		597.5
(-1.6)
P 		853.5
(0.5)
P 		1155.3
(3)
P 		720
avr 450.4
(-3) 		735.8
(-0.3) 		721.5
(-0.5) 		569.2
(-1.9) 		937.3
(1.6) 		1088.8
(3) 		638
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 277.1
(3)
P 		54.5
(-3)
P 		79.1
(-2.3)
P 		190.7
(0.7)
P 		223
B 199.4
(-0)
P 		99.8
(-2.1)
P 		56.9
(-3)
P 		345.2
(3)
P 		288
C 259.7
(2.4)
P 		126.6
(-2.8)
P 		120.3
(-3)
P 		274.6
(3)
P 		154
avr 245.4
(2.2) 		93.6
(-2.7) 		85.4
(-3) 		270.2
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 71.3
(-3)
P 		275.2
(2.7)
P 		144.1
(-1)
P 		143.9
(-1)
P 		287.8
(3)
P 		242
(1.7)
P 		217
B 184
(-2.1)
P 		214.7
(-1.4)
P 		193.6
(-1.9)
P 		143.8
(-3)
P 		408.1
(2.8)
P 		416.6
(3)
P 		273
C 161.4
(-2.1)
P 		240.6
(-0.3)
P 		179.5
(-1.7)
P 		120.2
(-3)
P 		276.2
(0.5)
P 		386.8
(3)
P 		267
avr 138.9
(-2.9) 		243.5
(0) 		172.4
(-2) 		136
(-3) 		324
(2.3) 		348.5
(3) 		213
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181819_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7896
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.4 NCBI
Target Description Y37D8A.4 /REP_DB=WormBase Gene ID /WP=CE20209 /TR=Q9XWW5 /GB=CAA21524.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067269 NCBI Caenorhabditis elegans Y37D8A.4 (Y37D8A.4) mRNA, complete cds. 11/11 None
SNAP00000028771 ENSEMBL cdna:SNAP chromosome:CEL140:III:12837309:12847705:-1 10/11 None
GENEFINDER00000028803 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12837309:12838826:-1 11/11 None
Y37D8A.4 ENSEMBL cdna:known chromosome:CEL140:III:12837129:12838826:-1 gene:Y37D8A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12837304-12838822(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.4
Entrez Gene 176699 Entrez gene
SwissProt Q9XWW5 EMBL-EBI
WormBase CE20209 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21524 Hypothetical protein Y37D8A.4 [Caenorhabditis elegans] ref|NP_499670.1| Y37D8A.4 [Caenorhabditis elegans] 1.0E-127
blast CAA21524 Hypothetical protein Y37D8A.4 [Caenorhabditis elegans] ref|NP_499670.1| Y37D8A.4 [Caenorhabditis elegans] 1.0E-102
blast CAE69539 Hypothetical protein CBG15748 [Caenorhabditis briggsae] 1.0E-87
blast CAE69539 Hypothetical protein CBG15748 [Caenorhabditis briggsae] 2.0E-70
Sequence
Target Sequence 
>C. ELEGANS:181819_S_AT
caataccgaagcttttccaccggagacctcgtcagcccatctcagccatctgcctttgag
ccagacttcatggaaatggaattcggtgccactccaaccacaagctcgcttccatctcac
tttgatgacaatgatcttgtcccagtcgagttcaaaaagtctggagttaagctcattcca
caaggcacacgaaaagccgaaaaagcgaagaaattcggcagcttcgaagagctctcaaaa
gtgaagctcgaggacattcaccgagcacaaagctggtttttcgtcgacgtcgatccgaag
tcagctgagcggattttaatgtcgaacggattttcggattcctcgtttctcatcagcttt
ttccgtcaaaaatatgtgctgtcgatttggagaaagacgaaagtcgagcacttggtgatt
aggaattatcagaagaagaacggaacgatggcttttcagctggacattgacagaagtttt
aaaaacctcgtcgaattgaccgaatactacaccaagaacaagagctacgtcctctgcacc
aaactatccaaaggagtttctcgcccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATACCGAAGCTTTTCCACCGGAG 556 179 97 Antisense
CATCTGCCTTTGAGCCAGACTTCAT 220 213 143 Antisense
CTCGCTTCCATCTCACTTTGATGAC 687 231 201 Antisense
GTTAAGCTCATTCCACAAGGCACAC 460 445 262 Antisense
TTCGGCAGCTTCGAAGAGCTCTCAA 426 695 310 Antisense
CGAGGACATTCACCGAGCACAAAGC 482 249 345 Antisense
GCACAAAGCTGGTTTTTCGTCGACG 519 315 361 Antisense
ACGTCGATCCGAAGTCAGCTGAGCG 42 95 383 Antisense
GGAACGATGGCTTTTCAGCTGGACA 627 529 538 Antisense
AGAACAAGAGCTACGTCCTCTGCAC 525 73 611 Antisense
CTATCCAAAGGAGTTTCTCGCCCAC 266 225 640 Antisense
Sequence Source Affymetrix Proprietary Database